Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   FGL04_RS11065 Genome accession   NZ_LR594035
Coordinates   1386476..1386919 (-) Length   147 a.a.
NCBI ID   WP_225247805.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1381476..1391919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07150 (NCTC5385_01559) prsA 1381561..1382502 (-) 942 WP_138068705.1 peptidylprolyl isomerase PrsA -
  FGL04_RS07155 (NCTC5385_01560) - 1382565..1383272 (-) 708 WP_171011252.1 O-methyltransferase -
  FGL04_RS07160 (NCTC5385_01561) - 1383440..1384081 (-) 642 WP_138068706.1 HAD family hydrolase -
  FGL04_RS07165 (NCTC5385_01562) pepF 1384158..1385960 (-) 1803 WP_138068707.1 oligoendopeptidase F Regulator
  FGL04_RS11060 (NCTC5385_01563) coiA 1385960..1386265 (-) 306 WP_225247804.1 hypothetical protein Machinery gene
  FGL04_RS11065 (NCTC5385_01564) coiA 1386476..1386919 (-) 444 WP_225247805.1 competence protein CoiA Machinery gene
  FGL04_RS07175 (NCTC5385_01565) - 1386983..1388128 (-) 1146 WP_138068708.1 MFS transporter -
  FGL04_RS07180 (NCTC5385_01566) - 1388223..1388939 (-) 717 WP_138068709.1 pseudouridine synthase -
  FGL04_RS07185 (NCTC5385_01567) nagB 1389006..1389716 (-) 711 WP_138068710.1 glucosamine-6-phosphate deaminase -
  FGL04_RS07190 (NCTC5385_01568) queA 1389890..1390918 (+) 1029 WP_138068711.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16892.81 Da        Isoelectric Point: 8.3907

>NTDB_id=1005091 FGL04_RS11065 WP_225247805.1 1386476..1386919(-) (coiA) [Streptococcus pseudoporcinus strain NCTC5385]
MLKAVDSCGNMISLLEEVPNRGDFYCPLCGGKLCLKKGNVIRPHFAHLNLRDCQFSQENESVEHLTLKSLVYHSLRPFQK
VEIEKYIEACGQVSDIMVNHQLALEIQCSPLPIERLIVRTRSYQEKGISVRWLLGQKLWLRNKLTAL

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1005091 FGL04_RS11065 WP_225247805.1 1386476..1386919(-) (coiA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGTTAAAAGCTGTTGATAGTTGTGGAAATATGATCTCCTTATTAGAGGAAGTTCCAAATAGAGGAGATTTTTATTGTCC
ACTATGCGGAGGGAAGCTTTGCTTAAAAAAGGGAAATGTGATAAGACCTCACTTTGCTCATCTGAATTTACGAGATTGTC
AGTTTTCTCAGGAAAACGAGTCGGTTGAACATCTCACGCTGAAGTCCTTGGTTTATCATTCCTTACGCCCGTTTCAAAAA
GTAGAAATTGAAAAATATATTGAGGCATGTGGTCAGGTTTCAGATATTATGGTCAATCATCAGTTAGCTCTTGAAATTCA
ATGTAGCCCCTTACCAATAGAACGTTTAATTGTGAGGACTAGGTCGTATCAAGAAAAGGGCATTTCTGTTCGGTGGCTCT
TAGGACAAAAGCTTTGGTTGAGAAATAAATTAACTGCTTTGTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

46.259

100

0.463
  coiA Streptococcus pneumoniae Rx1

46.259

100

0.463
  coiA Streptococcus pneumoniae D39

46.259

100

0.463
  coiA Streptococcus pneumoniae R6

46.259

100

0.463
  coiA Lactococcus lactis subsp. cremoris KW2

42.953

100

0.435
  coiA Streptococcus mitis NCTC 12261

43.846

88.435

0.388

Multiple sequence alignment