Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   FGL04_RS07485 Genome accession   NZ_LR594035
Coordinates   1452285..1452866 (+) Length   193 a.a.
NCBI ID   WP_138068755.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447285..1457866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07460 (NCTC5385_01623) - 1448239..1448490 (-) 252 WP_007894016.1 DUF3165 family protein -
  FGL04_RS07465 (NCTC5385_01624) typA 1448594..1450435 (-) 1842 WP_138068752.1 translational GTPase TypA -
  FGL04_RS07470 (NCTC5385_01625) - 1450611..1450991 (-) 381 WP_138068753.1 rhodanese-like domain-containing protein -
  FGL04_RS07475 (NCTC5385_01626) - 1451001..1451972 (-) 972 WP_138068754.1 ROK family glucokinase -
  FGL04_RS07480 (NCTC5385_01627) - 1451969..1452181 (-) 213 WP_007894027.1 YqgQ family protein -
  FGL04_RS07485 (NCTC5385_01628) cclA/cilC 1452285..1452866 (+) 582 WP_138068755.1 prepilin peptidase Machinery gene
  FGL04_RS07490 (NCTC5385_01630) - 1452930..1454063 (+) 1134 Protein_1474 IS3 family transposase -
  FGL04_RS07495 (NCTC5385_01631) - 1454081..1454974 (-) 894 WP_225247807.1 thiamine pyrophosphate-dependent enzyme -
  FGL04_RS07500 (NCTC5385_01632) - 1455367..1456248 (-) 882 WP_007893592.1 class II fructose-bisphosphate aldolase -
  FGL04_RS07510 (NCTC5385_01634) - 1456562..1457488 (-) 927 WP_138068756.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21515.05 Da        Isoelectric Point: 7.8699

>NTDB_id=1005056 FGL04_RS07485 WP_138068755.1 1452285..1452866(+) (cclA/cilC) [Streptococcus pseudoporcinus strain NCTC5385]
MTILLYFFLGASLGSFAGLVLDRFPEKSILWPPSHCSNCQNQLGFKDLVPVLSFIVSACRCRFCKVPINPLYIILEVLYG
LLFVFYALKGIFSLTDLTLISFSILLSLFDIKSRSYPMLFWLIAYTTTVMILGFNLLSCIFLTLALLAILFPQSIGSGDL
FYLSLLALAYPLSTLLWIIQGASLLGMLHGCIL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1005056 FGL04_RS07485 WP_138068755.1 1452285..1452866(+) (cclA/cilC) [Streptococcus pseudoporcinus strain NCTC5385]
ATGACCATATTACTTTATTTTTTCCTTGGAGCAAGTTTAGGCTCCTTTGCTGGACTAGTGCTCGATAGGTTTCCTGAAAA
GTCTATTCTTTGGCCACCGAGCCATTGTTCCAACTGTCAGAATCAACTTGGCTTTAAAGACTTGGTACCAGTTTTATCCT
TTATAGTTAGCGCCTGTCGCTGTCGTTTTTGTAAAGTCCCTATCAATCCCCTTTACATCATTCTTGAAGTCCTATATGGA
CTCTTATTTGTCTTTTATGCCTTAAAAGGTATCTTCAGCCTGACAGATTTAACCCTTATTTCTTTTTCTATTCTTCTTTC
CCTTTTTGATATCAAATCAAGATCCTACCCAATGCTCTTTTGGCTGATAGCTTATACCACGACAGTAATGATTTTGGGGT
TTAATCTTTTATCCTGTATTTTTCTCACTTTAGCCCTATTGGCAATCCTCTTCCCCCAGTCCATTGGTAGTGGAGACCTC
TTTTATCTCTCCCTTTTGGCCTTAGCTTACCCTTTATCAACTCTTTTATGGATTATTCAGGGAGCTAGTCTCCTTGGAAT
GCTTCATGGATGTATACTATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

41.711

96.891

0.404
  cclA/cilC Streptococcus pneumoniae TIGR4

40.761

95.337

0.389
  cclA/cilC Streptococcus pneumoniae Rx1

39.674

95.337

0.378
  cclA/cilC Streptococcus pneumoniae D39

39.674

95.337

0.378
  cclA/cilC Streptococcus pneumoniae R6

39.674

95.337

0.378
  cclA/cilC Streptococcus mitis NCTC 12261

38.503

96.891

0.373

Multiple sequence alignment