Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FGL00_RS00740 Genome accession   NZ_LR594034
Coordinates   121880..122308 (+) Length   142 a.a.
NCBI ID   WP_014611932.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116880..127308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS00720 (NCTC8546_00148) - 119223..119588 (+) 366 WP_003055257.1 DUF1033 family protein -
  FGL00_RS00725 (NCTC8546_00149) comGA/cglA 119669..120610 (+) 942 WP_138098129.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL00_RS00730 (NCTC8546_00150) comGB 120546..121577 (+) 1032 WP_138098784.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL00_RS00735 (NCTC8546_00151) comGC 121579..121905 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL00_RS00740 (NCTC8546_00152) comGD 121880..122308 (+) 429 WP_014611932.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL00_RS00745 (NCTC8546_00153) comGE 122316..122561 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL00_RS00750 (NCTC8546_00154) comGF 122542..122982 (+) 441 WP_138098131.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL00_RS00755 (NCTC8546_00155) comGG 123005..123334 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  FGL00_RS00760 (NCTC8546_00156) comGH 123397..124350 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  FGL00_RS00765 (NCTC8546_00157) - 124409..125605 (+) 1197 WP_138098133.1 acetate kinase -
  FGL00_RS00770 (NCTC8546_00158) - 125911..126117 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  FGL00_RS00775 (NCTC8546_00159) - 126220..126900 (+) 681 WP_003060329.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16410.89 Da        Isoelectric Point: 9.9660

>NTDB_id=1004897 FGL00_RS00740 WP_014611932.1 121880..122308(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MRLKNCNLKAFTLLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1004897 FGL00_RS00740 WP_014611932.1 121880..122308(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACATTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

38.235

95.775

0.366