Detailed information NTG1004891

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: FGL00_RS00350
• Genome accession: NZ_LR594034
• Coordinates: 57284..58282 (+)
• Length: 332 a.a.
• NCBI ID: WP_015057190.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 52284..63282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL00_RS00335 (NCTC8546_00068)	-	52660..54144 (+)	1485	WP_232043391.1	DUF262 domain-containing protein	-
FGL00_RS00340 (NCTC8546_00069)	purB	54704..55996 (+)	1293	WP_022554088.1	adenylosuccinate lyase	-
FGL00_RS00345 (NCTC8546_00070)	comR	56138..57049 (+)	912	WP_012766420.1	XRE family transcriptional regulator	Regulator
FGL00_RS11090 (NCTC8546_00071)	comS	57136..57231 (+)	96	WP_198455558.1	quorum-sensing system DWW-type pheromone	Regulator
FGL00_RS00350 (NCTC8546_00072)	ruvB	57284..58282 (+)	999	WP_015057190.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FGL00_RS00355 (NCTC8546_00073)	-	58417..58848 (+)	432	WP_048327929.1	low molecular weight protein-tyrosine-phosphatase	-
FGL00_RS00360 (NCTC8546_00074)	-	58877..59278 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
FGL00_RS00365 (NCTC8546_00075)	-	59275..61050 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37274.73 Da
• Isoelectric Point: 4.5556

>NTDB_id=1004891 FGL00_RS00350 WP_015057190.1 57284..58282(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPYPSK

Nucleotide

• Length: 999 bp

>NTDB_id=1004891 FGL00_RS00350 WP_015057190.1 57284..58282(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGACCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.795	0.593
ruvB	Helicobacter pylori 26695	50.613	98.193	0.497
ruvB	Synechocystis sp. PCC 6803	50	95.783	0.479