Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FGK95_RS10035 Genome accession   NZ_LR590625
Coordinates   2020769..2021365 (-) Length   198 a.a.
NCBI ID   WP_003045733.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015769..2026365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS10005 (SAMEA5186854_02010) - 2016025..2016294 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  FGK95_RS10010 (SAMEA5186854_02011) spx 2016406..2016804 (-) 399 WP_093999148.1 transcriptional regulator Spx -
  FGK95_RS10015 (SAMEA5186854_02012) recA 2017201..2018337 (-) 1137 WP_093999149.1 recombinase RecA Machinery gene
  FGK95_RS10020 (SAMEA5186854_02013) cinA 2018443..2019714 (-) 1272 WP_093999150.1 competence/damage-inducible protein A Machinery gene
  FGK95_RS11025 - 2019831..2019989 (-) 159 WP_223824822.1 VOC family protein -
  FGK95_RS10030 (SAMEA5186854_02015) - 2020187..2020759 (-) 573 WP_003045731.1 DNA-3-methyladenine glycosylase I -
  FGK95_RS10035 (SAMEA5186854_02016) ruvA 2020769..2021365 (-) 597 WP_003045733.1 Holliday junction branch migration protein RuvA Machinery gene
  FGK95_RS10040 (SAMEA5186854_02017) - 2021349..2022587 (-) 1239 WP_003045734.1 MDR family MFS transporter -
  FGK95_RS10045 (SAMEA5186854_02018) hexB 2022598..2024580 (-) 1983 WP_039994902.1 DNA mismatch repair endonuclease MutL Machinery gene
  FGK95_RS10945 - 2024674..2025586 (-) 913 Protein_1904 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21859.21 Da        Isoelectric Point: 6.4933

>NTDB_id=1004880 FGK95_RS10035 WP_003045733.1 2020769..2021365(-) (ruvA) [Streptococcus canis strain B700072]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGKTKVNNHTAGNPQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1004880 FGK95_RS10035 WP_003045733.1 2020769..2021365(-) (ruvA) [Streptococcus canis strain B700072]
ATGTACGATTATATTAAAGGTCAGTTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTAGGCTATAT
TATTAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTATCTGCATCAAGTTATTCGTG
AGGATGCTCACTTGTTGTTTGGCTTTCACACAGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTCTCAGGTATT
GGTCCAACAACAGCCTTAGCTATCGTTGCGGTTGATGATAATCAGGGACTTGTTAATGCCATTGATAACAGTGACATTAA
ATACTTGATGAAATTTCCTAAGATTGGTAAAAAAACAGCTCAGCAAATGGTGCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAAGACCAAAGTGAACAACCATACAGCAGGTAATCCTCAACTAGACGAAGCGATCGAAGCTCTC
CTTGCCCTCGGTTATAAGGCAACAGAATTGAAGAAAATTCGTGCTTTCTTTGAAGGAACTTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414

Multiple sequence alignment