Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FGK81_RS09105 Genome accession   NZ_LR590466
Coordinates   1766299..1766727 (-) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8193     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761299..1771727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS09070 (NCTC8193_01805) proC 1761667..1762437 (+) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  FGK81_RS09075 - 1762520..1762828 (-) 309 WP_011017251.1 hypothetical protein -
  FGK81_RS09080 (NCTC8193_01806) - 1763015..1764211 (-) 1197 WP_011888536.1 acetate kinase -
  FGK81_RS09085 (NCTC8193_01807) comGH 1764270..1765223 (-) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  FGK81_RS09090 (NCTC8193_01808) comGG 1765321..1765647 (-) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  FGK81_RS09095 (NCTC8193_01809) comGF 1765631..1766065 (-) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGK81_RS09100 (NCTC8193_01810) comGE 1766058..1766342 (-) 285 WP_041174183.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGK81_RS09105 (NCTC8193_01811) comGD 1766299..1766727 (-) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGK81_RS09110 (NCTC8193_01812) comGC 1766702..1767028 (-) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK81_RS09115 (NCTC8193_01813) comGB 1767030..1768064 (-) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK81_RS09120 (NCTC8193_01814) comGA 1768000..1768938 (-) 939 WP_011888534.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK81_RS09125 (NCTC8193_01815) - 1769031..1769396 (-) 366 WP_002986560.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=1004683 FGK81_RS09105 WP_002986548.1 1766299..1766727(-) (comGD) [Streptococcus pyogenes strain NCTC8193]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1004683 FGK81_RS09105 WP_002986548.1 1766299..1766727(-) (comGD) [Streptococcus pyogenes strain NCTC8193]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366