Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AAG688_RS15330 Genome accession   NZ_CP157201
Coordinates   3318896..3319954 (-) Length   352 a.a.
NCBI ID   WP_411833052.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain SDU_PSEU2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3313896..3324954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG688_RS15310 - 3314994..3316916 (-) 1923 WP_411833048.1 type IV pilus secretin PilQ -
  AAG688_RS15315 - 3316931..3317476 (-) 546 WP_411833049.1 pilus assembly protein PilP -
  AAG688_RS15320 - 3317473..3318150 (-) 678 WP_411833050.1 type 4a pilus biogenesis protein PilO -
  AAG688_RS15325 - 3318147..3318896 (-) 750 WP_411833051.1 PilN domain-containing protein -
  AAG688_RS15330 pilM 3318896..3319954 (-) 1059 WP_411833052.1 pilus assembly protein PilM Machinery gene
  AAG688_RS15335 - 3320172..3322589 (+) 2418 WP_411833053.1 penicillin-binding protein 1A -
  AAG688_RS15340 - 3322783..3323430 (+) 648 WP_411833054.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37914.56 Da        Isoelectric Point: 4.4070

>NTDB_id=1004586 AAG688_RS15330 WP_411833052.1 3318896..3319954(-) (pilM) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
MGLIPKSQSPLIGVDISSTAVKLLQLSRVGNRYRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRAGSKAKHAAAA
VAGSAVITKIIPMPAELDEADLEAQVELEAVNYIPYPIEEVNLDFEVLGPMPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALMADDLPIPQDGVVALVDIGATMTTLNVLRRGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLGGGCASLQGLPEMVEEQLGVPTIVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1004586 AAG688_RS15330 WP_411833052.1 3318896..3319954(-) (pilM) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
GTGGGGCTAATCCCAAAAAGCCAGTCGCCGCTCATCGGCGTCGATATCAGTTCGACCGCGGTCAAGCTGCTGCAGCTTTC
GCGCGTCGGCAACCGTTACCGCGTGGATCACTATGCGGTCGAACCCCTTCCGCCCAATGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCGGTGACCCGCGCGGGTAGCAAGGCCAAGCATGCCGCCGCCGCC
GTCGCCGGATCGGCGGTGATCACCAAGATCATCCCGATGCCGGCCGAACTGGACGAGGCCGACCTGGAGGCCCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTGGGCCCGATGCCCAACA
ACCCCGAGATGGTGCAGGTATTGCTGGCGGCCTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGATGGCCGACGACCTGCCGAT
CCCGCAGGACGGCGTGGTCGCGCTGGTCGACATCGGCGCGACGATGACCACCCTCAACGTCCTGCGCCGCGGCCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGGTCATGCGCCGCTACGGCCTGACCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACCGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTGCTGGGCGGCG
GCTGCGCCTCCCTGCAGGGGCTGCCGGAGATGGTCGAGGAACAGCTCGGCGTGCCCACCATCGTGGCCAACCCGCTGGCG
CAGATGACCCTCGGCCCGCGCGTGCAGGCCCATGCCCTGGCGCAGGACGCCCCGGCGCTGATGATCGCCACCGGCCTGGC
GTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter nosocomialis M2

50.284

100

0.503
  comM Acinetobacter baylyi ADP1

50.286

99.432

0.5
  pilM Legionella pneumophila strain ERS1305867

45.584

99.716

0.455

Multiple sequence alignment