Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABA51_RS06195 Genome accession   NZ_AP027266
Coordinates   1298666..1299178 (-) Length   170 a.a.
NCBI ID   WP_338275494.1    Uniprot ID   -
Organism   Roseicyclus marinus strain Dej080120_10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1293666..1304178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA51_RS06180 (MACH21_12350) trpE 1293860..1295371 (-) 1512 WP_338275486.1 anthranilate synthase component I -
  AABA51_RS06185 (MACH21_12360) - 1295371..1297224 (-) 1854 WP_338275488.1 SurA N-terminal domain-containing protein -
  AABA51_RS06190 (MACH21_12370) - 1297343..1298533 (-) 1191 WP_338275491.1 aminotransferase -
  AABA51_RS06195 (MACH21_12380) ssb 1298666..1299178 (-) 513 WP_338275494.1 single-stranded DNA-binding protein Machinery gene
  AABA51_RS06200 (MACH21_12390) - 1299345..1299938 (+) 594 WP_338275496.1 lytic transglycosylase domain-containing protein -
  AABA51_RS06205 (MACH21_12400) - 1299930..1300526 (-) 597 WP_338275497.1 sigma-70 family RNA polymerase sigma factor -
  AABA51_RS06210 (MACH21_12410) - 1300836..1301108 (+) 273 WP_338275499.1 hypothetical protein -
  AABA51_RS06215 (MACH21_12420) ilvN 1301205..1301765 (-) 561 WP_338275502.1 acetolactate synthase small subunit -
  AABA51_RS06220 (MACH21_12430) - 1301839..1303527 (-) 1689 WP_338275504.1 BCCT family transporter -
  AABA51_RS06225 (MACH21_12440) - 1303568..1303981 (-) 414 WP_338275507.1 universal stress protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18017.62 Da        Isoelectric Point: 5.0648

>NTDB_id=100450 AABA51_RS06195 WP_338275494.1 1298666..1299178(-) (ssb) [Roseicyclus marinus strain Dej080120_10]
MAGSVNKVILIGNLGRDPEVRSFPNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDGRDGGGSGGGGGGYGGGASGGYGDDRGGGYPDDRGGPSGGGGYGG
GGDVDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=100450 AABA51_RS06195 WP_338275494.1 1298666..1299178(-) (ssb) [Roseicyclus marinus strain Dej080120_10]
ATGGCCGGATCCGTCAACAAGGTGATCCTGATCGGAAACCTGGGCCGCGACCCCGAGGTGCGCAGCTTTCCCAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCGGAGAACTGGAAGGACCGCAACACCGGCGAGCGGCGCGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTTTCCGAACCGCTGGCGCGGATCGCCGAGCAATACCTGCGCAAAGGGTCCAAGGTCTATATC
GAGGGGCAGCTCGAAACCCGCAAATGGCAAGACCAGTCGGGGCAGGACCGGTATTCGACGGAAGTGGTGCTGCGGCCCTA
TCGGGGCGAGCTGACGCTTCTGGACGGGCGTGACGGCGGCGGCAGCGGTGGTGGCGGCGGCGGCTATGGCGGCGGCGCCT
CGGGCGGCTATGGCGACGACCGCGGCGGCGGCTATCCCGACGACAGGGGCGGCCCGAGCGGTGGCGGCGGCTATGGCGGC
GGCGGGGATGTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.535
  ssb Glaesserella parasuis strain SC1401

54.362

87.647

0.476
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.435
  ssb Neisseria meningitidis MC58

40.782

100

0.429

Multiple sequence alignment