Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABA34_RS05015 Genome accession   NZ_AP027262
Coordinates   1042419..1042943 (+) Length   174 a.a.
NCBI ID   WP_034951960.1    Uniprot ID   A0AA48HCG4
Organism   Erythrobacter sp. Dej080120_24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1037419..1047943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA34_RS04980 (MACH24_09920) - 1037886..1038365 (-) 480 WP_034951948.1 hypothetical protein -
  AABA34_RS04985 (MACH24_09930) - 1038414..1038992 (-) 579 WP_338304156.1 DUF4402 domain-containing protein -
  AABA34_RS04990 (MACH24_09940) - 1039055..1039777 (-) 723 WP_338304157.1 SprT family zinc-dependent metalloprotease -
  AABA34_RS04995 (MACH24_09950) - 1039774..1040262 (-) 489 WP_051699496.1 YcgN family cysteine cluster protein -
  AABA34_RS05000 (MACH24_09960) - 1040250..1040885 (-) 636 WP_338304158.1 SCO family protein -
  AABA34_RS05005 (MACH24_09970) - 1040975..1041625 (+) 651 WP_338304159.1 ankyrin repeat domain-containing protein -
  AABA34_RS05010 (MACH24_09980) - 1041627..1042313 (+) 687 WP_338304160.1 COQ9 family protein -
  AABA34_RS05015 (MACH24_09990) ssb 1042419..1042943 (+) 525 WP_034951960.1 single-stranded DNA-binding protein Machinery gene
  AABA34_RS05020 (MACH24_10000) - 1042981..1043862 (-) 882 WP_338304161.1 TonB family protein -
  AABA34_RS05025 (MACH24_10010) - 1043958..1044497 (-) 540 WP_338304162.1 YceD family protein -
  AABA34_RS05030 (MACH24_10020) - 1044494..1045021 (-) 528 WP_338304163.1 ubiquinol-cytochrome C chaperone family protein -
  AABA34_RS05035 (MACH24_10030) - 1045283..1045777 (+) 495 WP_338304164.1 outer membrane protein assembly factor BamE -
  AABA34_RS05040 (MACH24_10040) hslV 1045831..1046391 (+) 561 WP_338304165.1 ATP-dependent protease subunit HslV -
  AABA34_RS05045 (MACH24_10050) hslU 1046409..1047710 (+) 1302 WP_338304166.1 ATP-dependent protease ATPase subunit HslU -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 17725.30 Da        Isoelectric Point: 5.2437

>NTDB_id=100420 AABA34_RS05015 WP_034951960.1 1042419..1042943(+) (ssb) [Erythrobacter sp. Dej080120_24]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRVATTETWKDRNSGERQERTEWHTVAIFNEGLAGVAERYLKKGSKVYI
EGQLQTRKWQDQNGNDRYSTEVVLRGPNSVMTMLDSAGGGGGGMGGGGGRSGGGYGGGGGAGGAGGGSGGGWNQGGGSGS
SGGGYDDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=100420 AABA34_RS05015 WP_034951960.1 1042419..1042943(+) (ssb) [Erythrobacter sp. Dej080120_24]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCGGACCCCGAAGTGCGCACGTTTCAGAACGGCGG
CAAGGTCTGCAACCTGCGCGTCGCCACGACCGAGACGTGGAAAGATCGCAACTCGGGTGAGCGGCAGGAACGCACCGAAT
GGCACACCGTCGCGATCTTCAACGAAGGTCTGGCAGGCGTCGCCGAACGCTATCTGAAGAAAGGCAGCAAGGTCTATATC
GAAGGCCAGTTGCAAACCCGCAAATGGCAGGACCAGAACGGCAATGACCGGTATTCGACCGAAGTCGTCCTGCGCGGCCC
TAACTCGGTGATGACCATGCTCGACAGCGCCGGAGGCGGCGGTGGCGGCATGGGTGGCGGCGGTGGCCGTTCGGGTGGCG
GCTACGGCGGCGGCGGTGGTGCCGGTGGCGCTGGCGGCGGTTCGGGCGGTGGCTGGAACCAGGGTGGCGGCAGCGGCAGC
TCGGGCGGCGGCTACGACGATCTGGACGACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.511
  ssb Glaesserella parasuis strain SC1401

42.929

100

0.489
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.42
  ssb Neisseria meningitidis MC58

40.782

100

0.42

Multiple sequence alignment