Detailed information NTG1004052

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: E0F40_RS00840
• Genome accession: NZ_LR216065
• Coordinates: 149796..150389 (+)
• Length: 197 a.a.
• NCBI ID: WP_000273417.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 144796..155389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0F40_RS00815 (SAMEA3714487_00144)	-	145007..146269 (-)	1263	WP_000075789.1	NRAMP family divalent metal transporter	-
E0F40_RS00820 (SAMEA3714487_00145)	-	146579..147037 (-)	459	WP_000745054.1	DUF3021 domain-containing protein	-
E0F40_RS00825 (SAMEA3714487_00146)	brsR	147034..147474 (-)	441	WP_000861956.1	LytTR family DNA-binding domain-containing protein	Regulator
E0F40_RS00835 (SAMEA3714487_00147)	hexB	147831..149780 (+)	1950	WP_000018209.1	DNA mismatch repair endonuclease MutL	Machinery gene
E0F40_RS00840 (SAMEA3714487_00148)	ruvA	149796..150389 (+)	594	WP_000273417.1	Holliday junction branch migration protein RuvA	Machinery gene
E0F40_RS00845 (SAMEA3714487_00149)	-	150399..150584 (+)	186	Protein_160	DNA-3-methyladenine glycosylase I	-
E0F40_RS00855 (SAMEA3714487_00151)	-	150772..151017 (+)	246	WP_001813542.1	hypothetical protein	-
E0F40_RS00860 (SAMEA3714487_00152)	-	151014..151349 (+)	336	WP_000806926.1	hypothetical protein	-
E0F40_RS00865 (SAMEA3714487_00153)	-	151362..151730 (+)	369	WP_000567222.1	hypothetical protein	-
E0F40_RS00870 (SAMEA3714487_00154)	-	151717..152016 (+)	300	WP_001072467.1	DUF5960 family protein	-
E0F40_RS00875 (SAMEA3714487_00155)	msr(D)	152134..153597 (-)	1464	WP_000420313.1	ABC-F type ribosomal protection protein Msr(D)	-
E0F40_RS00880 (SAMEA3714487_00156)	mef(A)	153618..154835 (-)	1218	WP_000417519.1	macrolide efflux MFS transporter Mef(A)	-

Sequence

Protein

• Length: 197 a.a.
• Molecular weight: 21664.13 Da
• Isoelectric Point: 6.2573

>NTDB_id=1004052 E0F40_RS00840 WP_000273417.1 149796..150389(+) (ruvA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MYEYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide

• Length: 594 bp

>NTDB_id=1004052 E0F40_RS00840 WP_000273417.1 149796..150389(+) (ruvA) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGTACGAATATCTAAAAGGAATCATTACCAAAATCACTGCCAAATACATTGTTCTTGAAACCAATGGTATCGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGACAGGTCAATCAAGAAGCCCAAATTTATGTGCATCAGGTTGTGCGTG
AGGATGCCCATCTGCTTTATGGATTTCGCTCAGAAGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTGGCCATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAAGCCATCGAAACCAAGAATATTAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CTGGAGATGACCTTCCTGCTAAGGTCGCAGTGCAAGCAAGCGCTGAAAACCAAGAATTGGAAGAAGCCATGGAAGCCATG
TTGGCACTGGGATACAAGGCGACCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTTAAATAG

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• Helix-hairpin-helix domain (HHH_5) (71-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	99.492	100	0.995
ruvA	Streptococcus pneumoniae R6	98.985	100	0.99
ruvA	Streptococcus pneumoniae D39	98.985	100	0.99
ruvA	Bacillus subtilis subsp. subtilis str. 168	40.291	100	0.421