Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABG193_RS06365 Genome accession   NZ_CP157011
Coordinates   1286549..1287061 (-) Length   170 a.a.
NCBI ID   WP_127898262.1    Uniprot ID   -
Organism   Paracoccus marcusii strain HNIBRBA1908     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1281549..1292061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG193_RS06340 (ABG193_06335) - 1281800..1283260 (-) 1461 WP_347918639.1 hypothetical protein -
  ABG193_RS06345 (ABG193_06340) - 1283253..1283417 (-) 165 WP_347918642.1 hypothetical protein -
  ABG193_RS06350 (ABG193_06345) - 1283544..1284095 (+) 552 WP_347918644.1 shikimate kinase -
  ABG193_RS06355 (ABG193_06350) aroB 1284092..1285198 (+) 1107 WP_347918646.1 3-dehydroquinate synthase -
  ABG193_RS06360 (ABG193_06355) - 1285275..1286321 (-) 1047 WP_347918649.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  ABG193_RS06365 (ABG193_06360) ssb 1286549..1287061 (-) 513 WP_127898262.1 single-stranded DNA-binding protein Machinery gene
  ABG193_RS06370 (ABG193_06365) - 1287235..1287855 (+) 621 WP_045999444.1 lytic transglycosylase domain-containing protein -
  ABG193_RS06375 (ABG193_06370) - 1287859..1288380 (-) 522 WP_232303257.1 lytic transglycosylase domain-containing protein -
  ABG193_RS06380 (ABG193_06375) lpdA 1288373..1289761 (-) 1389 WP_045999443.1 dihydrolipoyl dehydrogenase -
  ABG193_RS06385 (ABG193_06380) - 1289824..1290225 (-) 402 WP_347918654.1 MAPEG family protein -
  ABG193_RS06390 (ABG193_06385) - 1290225..1290479 (-) 255 WP_173403896.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17825.52 Da        Isoelectric Point: 5.9567

>NTDB_id=1003841 ABG193_RS06365 WP_127898262.1 1286549..1287061(-) (ssb) [Paracoccus marcusii strain HNIBRBA1908]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSRGGGGGQGGG
RADYDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1003841 ABG193_RS06365 WP_127898262.1 1286549..1287061(-) (ssb) [Paracoccus marcusii strain HNIBRBA1908]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGCACCGAAT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAATGGCAGGACCAGTCCGGCCAGGACCGCTACTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTATGACGACTATAACCAGGGCGGCGGATCGTCGTCGCGCGGCGGCGGCGGCGGCCAAGGCGGCGGA
CGCGCCGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.535
  ssb Vibrio cholerae strain A1552

49.711

100

0.506
  ssb Neisseria meningitidis MC58

36.464

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.464

100

0.388

Multiple sequence alignment