Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABH008_RS12155 Genome accession   NZ_CP157005
Coordinates   2701164..2701637 (-) Length   157 a.a.
NCBI ID   WP_347985886.1    Uniprot ID   -
Organism   Methylomonas sp. AM2-LC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2696164..2706637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH008_RS12135 - 2697657..2699216 (+) 1560 WP_347985882.1 phospholipase D family protein -
  ABH008_RS12140 lepB 2699612..2700439 (-) 828 WP_347985883.1 signal peptidase I -
  ABH008_RS12145 - 2700498..2700686 (-) 189 WP_347985884.1 HepT-like ribonuclease domain-containing protein -
  ABH008_RS12150 - 2700683..2700973 (-) 291 WP_347985885.1 nucleotidyltransferase domain-containing protein -
  ABH008_RS12155 ssb 2701164..2701637 (-) 474 WP_347985886.1 single-stranded DNA-binding protein Machinery gene
  ABH008_RS12160 - 2701675..2703060 (-) 1386 WP_347985887.1 MFS transporter -
  ABH008_RS12165 - 2703219..2704124 (+) 906 WP_347985888.1 AAA family ATPase -
  ABH008_RS12170 - 2704138..2705085 (+) 948 WP_347985889.1 DUF58 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17360.28 Da        Isoelectric Point: 5.2868

>NTDB_id=1003836 ABH008_RS12155 WP_347985886.1 2701164..2701637(-) (ssb) [Methylomonas sp. AM2-LC]
MLNKVMLIGRLGADPEVRYMPSGDAITNIRLATSVRWKDKQTGERKEETEWHRVVFFRGLAKVAGEYLKKGSQVYVEGRI
RTNKWQGQDGQDRYTTEIIADEMHMLDSKSGGTANYGGDSAPPVSSYDNRPTPPASAGGAPNSAPASYDDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1003836 ABH008_RS12155 WP_347985886.1 2701164..2701637(-) (ssb) [Methylomonas sp. AM2-LC]
ATGCTGAACAAAGTTATGCTGATAGGCCGCCTGGGCGCTGATCCAGAAGTGCGCTACATGCCAAGCGGCGATGCAATTAC
CAATATCCGCCTTGCCACCAGCGTGCGTTGGAAAGACAAACAAACCGGCGAAAGAAAAGAAGAAACCGAATGGCATCGCG
TGGTATTTTTCCGCGGTTTAGCCAAAGTTGCCGGCGAATACCTGAAAAAAGGCAGCCAAGTGTATGTAGAAGGCCGTATC
CGCACCAATAAATGGCAAGGACAAGACGGTCAAGATCGTTACACCACCGAAATTATTGCCGACGAAATGCATATGTTAGA
CAGCAAAAGCGGCGGCACAGCCAATTATGGCGGCGACAGCGCCCCACCCGTCAGCAGTTACGACAACCGCCCAACTCCCC
CCGCGTCAGCAGGCGGTGCACCCAATTCTGCCCCCGCTTCTTATGATGATTTTGATGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.744

100

0.567
  ssb Glaesserella parasuis strain SC1401

50.282

100

0.567
  ssb Neisseria meningitidis MC58

47.399

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.399

100

0.522

Multiple sequence alignment