Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   EL305_RS12430 Genome accession   NZ_LR134528
Coordinates   2096390..2096839 (+) Length   149 a.a.
NCBI ID   WP_002237378.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2091390..2101839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS12425 (NCTC12163_02078) comE 2095838..2096302 (+) 465 WP_025461773.1 ComEA family DNA-binding protein Machinery gene
  EL305_RS12430 (NCTC12163_02079) comP 2096390..2096839 (+) 450 WP_002237378.1 type IV pilin protein Machinery gene
  EL305_RS14195 (NCTC12163_02080) - 2096929..2097323 (-) 395 Protein_2080 5'-nucleotidase -
  EL305_RS12440 (NCTC12163_02081) - 2097394..2097606 (-) 213 WP_002234366.1 SWIM zinc finger family protein -
  EL305_RS12445 (NCTC12163_02082) - 2097896..2098951 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  EL305_RS12450 (NCTC12163_02083) - 2098965..2100611 (+) 1647 WP_002237377.1 TIGR02391 family protein -
  EL305_RS12455 (NCTC12163_02084) - 2100615..2101037 (+) 423 WP_002237376.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16864.83 Da        Isoelectric Point: 9.7951

>NTDB_id=1003684 EL305_RS12430 WP_002237378.1 2096390..2096839(+) (comP) [Neisseria meningitidis strain NCTC12163]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINTVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1003684 EL305_RS12430 WP_002237378.1 2096390..2096839(+) (comP) [Neisseria meningitidis strain NCTC12163]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATACAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483