Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL305_RS12425 Genome accession   NZ_LR134528
Coordinates   2095838..2096302 (+) Length   154 a.a.
NCBI ID   WP_025461773.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090838..2101302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS12425 (NCTC12163_02078) comE 2095838..2096302 (+) 465 WP_025461773.1 ComEA family DNA-binding protein Machinery gene
  EL305_RS12430 (NCTC12163_02079) comP 2096390..2096839 (+) 450 WP_002237378.1 type IV pilin protein Machinery gene
  EL305_RS14195 (NCTC12163_02080) - 2096929..2097323 (-) 395 Protein_2080 5'-nucleotidase -
  EL305_RS12440 (NCTC12163_02081) - 2097394..2097606 (-) 213 WP_002234366.1 SWIM zinc finger family protein -
  EL305_RS12445 (NCTC12163_02082) - 2097896..2098951 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  EL305_RS12450 (NCTC12163_02083) - 2098965..2100611 (+) 1647 WP_002237377.1 TIGR02391 family protein -
  EL305_RS12455 (NCTC12163_02084) - 2100615..2101037 (+) 423 WP_002237376.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16531.78 Da        Isoelectric Point: 10.8645

>NTDB_id=1003683 EL305_RS12425 WP_025461773.1 2095838..2096302(+) (comE) [Neisseria meningitidis strain NCTC12163]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1003683 EL305_RS12425 WP_025461773.1 2095838..2096302(+) (comE) [Neisseria meningitidis strain NCTC12163]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment