Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL323_RS01690 Genome accession   NZ_LR134526
Coordinates   313763..314089 (+) Length   108 a.a.
NCBI ID   WP_080542063.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308763..319089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS14850 - 312401..312538 (+) 138 Protein_273 ComEA family DNA-binding protein -
  EL323_RS01685 (NCTC10026_00310) - 312686..313693 (-) 1008 WP_080542062.1 IS5 family transposase -
  EL323_RS01690 (NCTC10026_00311) comE 313763..314089 (+) 327 WP_080542063.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL323_RS01695 (NCTC10026_00312) - 314203..314641 (-) 439 Protein_276 HK97 family phage prohead protease -
  EL323_RS01700 (NCTC10026_00314) - 314753..315346 (-) 594 WP_002218492.1 hypothetical protein -
  EL323_RS01705 (NCTC10026_00315) prmB 315491..316390 (+) 900 WP_172595918.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  EL323_RS15135 - 316403..316531 (+) 129 WP_002212671.1 hypothetical protein -
  EL323_RS01710 (NCTC10026_00316) - 316671..317408 (+) 738 WP_080542065.1 toxin-antitoxin system YwqK family antitoxin -
  EL323_RS01715 (NCTC10026_00317) - 317534..317806 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11262.45 Da        Isoelectric Point: 10.5346

>NTDB_id=1003553 EL323_RS01690 WP_080542063.1 313763..314089(+) (comE) [Neisseria meningitidis strain NCTC10026]
MFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAV
LAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1003553 EL323_RS01690 WP_080542063.1 313763..314089(+) (comE) [Neisseria meningitidis strain NCTC10026]
TTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCT
TGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCA
TTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGTATCGGCCCTGCGGTG
CTGGCGAAGCTGAAGGATCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGCCCCGGCAAAACCGGTGCTGCCCGCGGATAA
AAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(29-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  comE Neisseria gonorrhoeae MS11

96.296

100

0.963
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

75

0.389
  comEA Vibrio campbellii strain DS40M4

41.935

86.111

0.361