Detailed information NTG1003419

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABHM42_RS31175
• Genome accession: NZ_CP156941
• Coordinates: 6626236..6627384 (-)
• Length: 382 a.a.
• NCBI ID: WP_003110016.1
• Uniprot ID: A0A0H2ZL88
• Organism: Pseudomonas aeruginosa strain 2024CK-00455
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6621236..6632384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHM42_RS31155 (ABHM42_31150)	-	6621974..6623158 (-)	1185	WP_003110017.1	cystathionine gamma-synthase	-
ABHM42_RS31160 (ABHM42_31155)	-	6623155..6624528 (-)	1374	WP_003084562.1	pyridoxal-phosphate dependent enzyme	-
ABHM42_RS31165 (ABHM42_31160)	-	6624771..6625175 (-)	405	WP_003084560.1	NINE protein	-
ABHM42_RS31170 (ABHM42_31165)	czcD	6625329..6626228 (+)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
ABHM42_RS31175 (ABHM42_31170)	pilU	6626236..6627384 (-)	1149	WP_003110016.1	type IV pilus ATPase PilU	Machinery gene
ABHM42_RS31180 (ABHM42_31175)	pilT	6627562..6628596 (-)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
ABHM42_RS31185 (ABHM42_31180)	-	6628811..6629503 (+)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
ABHM42_RS31190 (ABHM42_31185)	proC	6629515..6630336 (+)	822	WP_003084546.1	pyrroline-5-carboxylate reductase	-
ABHM42_RS31195 (ABHM42_31190)	-	6630347..6630940 (+)	594	WP_003084544.1	YggT family protein	-
ABHM42_RS31200 (ABHM42_31195)	-	6630937..6631233 (+)	297	WP_031628111.1	DUF167 domain-containing protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42559.83 Da
• Isoelectric Point: 6.7792

>NTDB_id=1003419 ABHM42_RS31175 WP_003110016.1 6626236..6627384(-) (pilU) [Pseudomonas aeruginosa strain 2024CK-00455]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSNLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=1003419 ABHM42_RS31175 WP_003110016.1 6626236..6627384(-) (pilU) [Pseudomonas aeruginosa strain 2024CK-00455]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAATTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAACCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: A0A0H2ZL88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.22	100	0.882
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382