Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABHL50_RS17735 Genome accession   NZ_CP156933
Coordinates   3669657..3670475 (-) Length   272 a.a.
NCBI ID   WP_281717928.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00546     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664657..3675475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHL50_RS17720 (ABHL50_17720) pilE 3664874..3665299 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  ABHL50_RS17725 (ABHL50_17725) pilY2 3665296..3665778 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  ABHL50_RS17730 (ABHL50_17730) pilY1 3665791..3669645 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  ABHL50_RS17735 (ABHL50_17735) pilX 3669657..3670475 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABHL50_RS17740 (ABHL50_17740) pilW 3670472..3671473 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABHL50_RS17745 (ABHL50_17745) pilV 3671474..3672034 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABHL50_RS17750 (ABHL50_17750) fimU 3672028..3672501 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  ABHL50_RS17755 (ABHL50_17755) ispH 3672671..3673621 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABHL50_RS17760 (ABHL50_17760) gmk 3673744..3674373 (+) 630 WP_000015937.1 guanylate kinase -
  ABHL50_RS17765 (ABHL50_17765) rpoZ 3674446..3674724 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABHL50_RS17770 (ABHL50_17770) - 3674763..3674892 (+) 130 Protein_3470 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28846.73 Da        Isoelectric Point: 6.2314

>NTDB_id=1003357 ABHL50_RS17735 WP_281717928.1 3669657..3670475(-) (pilX) [Acinetobacter baumannii strain 2024CK-00546]
MTHLNYKKIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1003357 ABHL50_RS17735 WP_281717928.1 3669657..3670475(-) (pilX) [Acinetobacter baumannii strain 2024CK-00546]
ATGACCCATTTAAATTATAAAAAAATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment