Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EL267_RS05975 Genome accession   NZ_LR134520
Coordinates   1142639..1143709 (+) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae strain NCTC13947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137639..1148709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL267_RS05960 (NCTC13947_01175) - 1139052..1139738 (+) 687 WP_000280304.1 SatD family protein -
  EL267_RS05965 (NCTC13947_01176) - 1139728..1140501 (+) 774 WP_000622396.1 DUF3307 domain-containing protein -
  EL267_RS05970 (NCTC13947_01177) - 1140534..1142195 (-) 1662 WP_000093975.1 peptide ABC transporter substrate-binding protein -
  EL267_RS05975 (NCTC13947_01178) xerS 1142639..1143709 (+) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  EL267_RS05980 (NCTC13947_01179) - 1143752..1144690 (-) 939 WP_000620986.1 sensor histidine kinase -
  EL267_RS05985 (NCTC13947_01180) braR 1144687..1145355 (-) 669 WP_000076874.1 response regulator transcription factor Regulator
  EL267_RS05990 (NCTC13947_01181) - 1145465..1147420 (-) 1956 WP_000499561.1 FtsX-like permease family protein -
  EL267_RS05995 (NCTC13947_01182) - 1147422..1148174 (-) 753 WP_000923533.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=1003354 EL267_RS05975 WP_000817930.1 1142639..1143709(+) (xerS) [Streptococcus agalactiae strain NCTC13947]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1003354 EL267_RS05975 WP_000817930.1 1142639..1143709(+) (xerS) [Streptococcus agalactiae strain NCTC13947]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATATCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAATAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837

Multiple sequence alignment