Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EL267_RS05985 Genome accession   NZ_LR134520
Coordinates   1144687..1145355 (-) Length   222 a.a.
NCBI ID   WP_000076874.1    Uniprot ID   X5JZS1
Organism   Streptococcus agalactiae strain NCTC13947     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139687..1150355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL267_RS05965 (NCTC13947_01176) - 1139728..1140501 (+) 774 WP_000622396.1 DUF3307 domain-containing protein -
  EL267_RS05970 (NCTC13947_01177) - 1140534..1142195 (-) 1662 WP_000093975.1 peptide ABC transporter substrate-binding protein -
  EL267_RS05975 (NCTC13947_01178) xerS 1142639..1143709 (+) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  EL267_RS05980 (NCTC13947_01179) - 1143752..1144690 (-) 939 WP_000620986.1 sensor histidine kinase -
  EL267_RS05985 (NCTC13947_01180) braR 1144687..1145355 (-) 669 WP_000076874.1 response regulator transcription factor Regulator
  EL267_RS05990 (NCTC13947_01181) - 1145465..1147420 (-) 1956 WP_000499561.1 FtsX-like permease family protein -
  EL267_RS05995 (NCTC13947_01182) - 1147422..1148174 (-) 753 WP_000923533.1 ABC transporter ATP-binding protein -
  EL267_RS06000 (NCTC13947_01183) - 1148200..1149162 (-) 963 WP_001253125.1 S41 family peptidase -
  EL267_RS06005 (NCTC13947_01184) - 1149328..1149816 (+) 489 WP_001140790.1 PASTA domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25403.45 Da        Isoelectric Point: 5.0693

>NTDB_id=1003355 EL267_RS05985 WP_000076874.1 1144687..1145355(-) (braR) [Streptococcus agalactiae strain NCTC13947]
MSQEQGKIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1003355 EL267_RS05985 WP_000076874.1 1144687..1145355(-) (braR) [Streptococcus agalactiae strain NCTC13947]
ATGTCACAAGAGCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAGGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5DCL
  PDB 5DCM

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.198

0.464

Multiple sequence alignment