Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EL254_RS02055 Genome accession   NZ_LR134512
Coordinates   344330..344995 (+) Length   221 a.a.
NCBI ID   WP_126418180.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13949     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339330..349995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL254_RS02030 (NCTC13949_00395) - 339348..340016 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  EL254_RS02035 (NCTC13949_00396) - 340084..341172 (+) 1089 WP_000862118.1 glycerol dehydrogenase -
  EL254_RS02040 (NCTC13949_00397) cysK 341324..342250 (-) 927 WP_000036948.1 cysteine synthase A -
  EL254_RS02045 (NCTC13949_00398) - 342341..342985 (-) 645 WP_001108147.1 YigZ family protein -
  EL254_RS02050 (NCTC13949_00399) comFA/cflA 343041..344330 (+) 1290 WP_000432961.1 DEAD/DEAH box helicase Machinery gene
  EL254_RS02055 (NCTC13949_00400) comFC/cflB 344330..344995 (+) 666 WP_126418180.1 ComF family protein Machinery gene
  EL254_RS02060 (NCTC13949_00401) hpf 345072..345626 (+) 555 WP_000599094.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25469.69 Da        Isoelectric Point: 9.3075

>NTDB_id=1003097 EL254_RS02055 WP_126418180.1 344330..344995(+) (comFC/cflB) [Streptococcus agalactiae strain NCTC13949]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVHQFTLKNEAELGDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1003097 EL254_RS02055 WP_126418180.1 344330..344995(+) (comFC/cflB) [Streptococcus agalactiae strain NCTC13949]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCATCAATTTACATTAAAAAATGAGGCTGAGTTAGGGGACAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416