Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABEF79_RS10500 Genome accession   NZ_CP156810
Coordinates   2127361..2127687 (-) Length   108 a.a.
NCBI ID   WP_347460703.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2127926..2139148 2127361..2127687 flank 239


Gene organization within MGE regions


Location: 2127361..2139148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS10500 (ABEF79_10500) ssb 2127361..2127687 (-) 327 WP_347460703.1 single-stranded DNA-binding protein Machinery gene
  ABEF79_RS10505 (ABEF79_10505) - 2127926..2130043 (-) 2118 WP_347460704.1 DUF3987 domain-containing protein -
  ABEF79_RS10510 (ABEF79_10510) - 2130040..2130345 (-) 306 WP_347460706.1 hypothetical protein -
  ABEF79_RS10515 (ABEF79_10515) - 2130338..2130640 (-) 303 WP_347460707.1 hypothetical protein -
  ABEF79_RS10520 (ABEF79_10520) - 2130637..2130879 (-) 243 WP_221255425.1 hypothetical protein -
  ABEF79_RS10525 (ABEF79_10525) - 2130889..2131257 (-) 369 WP_347460708.1 hypothetical protein -
  ABEF79_RS10530 (ABEF79_10530) - 2131250..2131756 (-) 507 WP_347460710.1 BRO family protein -
  ABEF79_RS10535 (ABEF79_10535) - 2131753..2131971 (-) 219 WP_347460712.1 helix-turn-helix domain-containing protein -
  ABEF79_RS10540 (ABEF79_10540) - 2131975..2132268 (-) 294 WP_347460713.1 AlpA family phage regulatory protein -
  ABEF79_RS10545 (ABEF79_10545) - 2132406..2133059 (-) 654 WP_347460714.1 hypothetical protein -
  ABEF79_RS10550 (ABEF79_10550) - 2133203..2134393 (-) 1191 WP_347460715.1 site-specific integrase -
  ABEF79_RS10555 (ABEF79_10555) proB 2134586..2135719 (-) 1134 WP_034581780.1 glutamate 5-kinase -
  ABEF79_RS10560 (ABEF79_10560) cgtA 2135749..2136954 (-) 1206 WP_347456783.1 Obg family GTPase CgtA -
  ABEF79_RS10565 (ABEF79_10565) - 2137221..2138414 (+) 1194 WP_347456782.1 MFS transporter -
  ABEF79_RS10570 (ABEF79_10570) - 2138444..2139148 (-) 705 WP_347453806.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12209.87 Da        Isoelectric Point: 10.1510

>NTDB_id=1003008 ABEF79_RS10500 WP_347460703.1 2127361..2127687(-) (ssb) [Acinetobacter sp. ANC 7454]
MPNVNKVTVMGVLGRDPETKQFPNGGSITTFSVATTEFWKDKATGERKEATEWHRITTSNRLGEIASKYLKKGSKVYIEG
SLRTRKYKDKSGSEKEITEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1003008 ABEF79_RS10500 WP_347460703.1 2127361..2127687(-) (ssb) [Acinetobacter sp. ANC 7454]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTGTTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGTGGCAG
CATTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGGCCACTGGAGAGCGCAAAGAGGCTACAGAATGGC
ACAGAATCACCACTAGCAACCGATTAGGCGAGATTGCGAGTAAGTACCTCAAGAAAGGCAGCAAGGTTTATATTGAGGGC
AGCTTGCGAACCAGGAAGTACAAGGATAAAAGCGGATCGGAAAAGGAAATAACAGAGATTCGAGCCGATGAGCTGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.63

100

0.546
  ssb Neisseria gonorrhoeae MS11

50

98.148

0.491
  ssb Neisseria meningitidis MC58

50

98.148

0.491
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment