Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL238_RS05845 Genome accession   NZ_LR134507
Coordinates   1137117..1138457 (-) Length   446 a.a.
NCBI ID   WP_002854001.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC12851     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132117..1143457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL238_RS05820 (NCTC12851_01180) - 1132254..1133024 (+) 771 WP_052861409.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  EL238_RS05825 (NCTC12851_01181) metE 1133036..1135300 (+) 2265 WP_002877092.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EL238_RS05830 (NCTC12851_01182) metF 1135310..1136158 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EL238_RS05835 - 1136180..1136371 (-) 192 WP_002852856.1 membrane protein -
  EL238_RS05840 (NCTC12851_01183) atpB 1136368..1137048 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  EL238_RS05845 (NCTC12851_01184) radA 1137117..1138457 (-) 1341 WP_002854001.1 DNA repair protein RadA Machinery gene
  EL238_RS05850 (NCTC12851_01185) pilA 1138457..1139323 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  EL238_RS05855 (NCTC12851_01186) - 1139323..1139880 (-) 558 WP_126393813.1 TlpA disulfide reductase family protein -
  EL238_RS05860 - 1139963..1140589 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  EL238_RS05865 (NCTC12851_01187) rny 1140510..1142063 (+) 1554 WP_002853829.1 ribonuclease Y -
  EL238_RS05870 (NCTC12851_01188) - 1142072..1142629 (+) 558 WP_002866215.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49038.94 Da        Isoelectric Point: 6.9288

>NTDB_id=1003008 EL238_RS05845 WP_002854001.1 1137117..1138457(-) (radA) [Campylobacter jejuni strain NCTC12851]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1003008 EL238_RS05845 WP_002854001.1 1137117..1138457(-) (radA) [Campylobacter jejuni strain NCTC12851]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACACTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTTTATATTCAAATAAAATTACTTCAGCAGCAGG
AAGCATCACTCAAGTGCGTGAGATTACTTTTGAACTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGCGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

46.085

100

0.462
  radA Streptococcus pneumoniae Rx1

46.085

100

0.462
  radA Streptococcus pneumoniae D39

46.085

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.085

100

0.462
  radA Streptococcus mitis SK321

46.067

99.776

0.46
  radA Streptococcus mitis NCTC 12261

46.067

99.776

0.46
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.667

97.534

0.455

Multiple sequence alignment