Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABEF79_RS00865 Genome accession   NZ_CP156810
Coordinates   189872..190447 (+) Length   191 a.a.
NCBI ID   WP_034588730.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 190641..191303 189872..190447 flank 194


Gene organization within MGE regions


Location: 189872..191303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS00865 (ABEF79_00865) ssb 189872..190447 (+) 576 WP_034588730.1 single-stranded DNA-binding protein Machinery gene
  ABEF79_RS00870 (ABEF79_00870) - 190641..191303 (+) 663 WP_004783898.1 IS1595-like element ISAcra1 family transposase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20691.52 Da        Isoelectric Point: 6.4831

>NTDB_id=1002989 ABEF79_RS00865 WP_034588730.1 189872..190447(+) (ssb) [Acinetobacter sp. ANC 7454]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRAQGGEQSDNGGFAQPRFNNNNQQGGYANQGGYGAPQQGGFNNNAPAGN
GYGNNPGGFAPKAAPAAVAAPAADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1002989 ABEF79_RS00865 WP_034588730.1 189872..190447(+) (ssb) [Acinetobacter sp. ANC 7454]
ATGCGTGGTGTAAATAAGGTTATTTTGGTAGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCCAATGGGGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGAATCTTGGACGGACAAGAATACTGGCGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTATTGCACAACCGTCTAGGCGAAATCGCACAGCAGTACCTGCGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAGGAACGTTACACCACCGAAATTCGTGGTGAGCAGATGCAAAT
GCTGGATTCAGGCCGTGCCCAAGGTGGTGAACAGTCTGACAACGGTGGCTTTGCGCAACCGCGCTTTAACAACAATAACC
AGCAAGGTGGTTATGCGAATCAAGGCGGTTATGGCGCACCACAACAAGGTGGCTTTAACAATAATGCACCTGCAGGCAAT
GGCTATGGCAACAACCCGGGCGGTTTTGCACCAAAAGCAGCGCCAGCAGCAGTTGCAGCACCAGCAGCAGACTTAGATGA
CGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.688

100

0.55
  ssb Vibrio cholerae strain A1552

46.734

100

0.487
  ssb Neisseria gonorrhoeae MS11

40.526

99.476

0.403
  ssb Neisseria meningitidis MC58

40.426

98.429

0.398

Multiple sequence alignment