Detailed information NTG1002825

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ABEF87_RS14640
• Genome accession: NZ_CP156789
• Coordinates: 2965599..2966174 (-)
• Length: 191 a.a.
• NCBI ID: WP_034588730.1
• Uniprot ID: -
• Organism: Acinetobacter thermotolerans strain ANC 7919
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2954989..2965305	2965599..2966174	flank	294
IS/Tn	2964343..2965305	2965599..2966174	flank	294

Gene organization within MGE regions

Location: 2954989..2966174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF87_RS14585 (ABEF87_14585)	-	2954989..2955582 (-)	594	WP_347455380.1	DUF4145 domain-containing protein	-
ABEF87_RS14590 (ABEF87_14590)	-	2955811..2957030 (+)	1220	WP_347454564.1	IS3 family transposase	-
ABEF87_RS14600 (ABEF87_14600)	-	2957550..2958398 (-)	849	WP_034583782.1	cyclopropane-fatty-acyl-phospholipid synthase family protein	-
ABEF87_RS14605 (ABEF87_14605)	-	2958401..2959708 (-)	1308	WP_034583780.1	FAD-dependent oxidoreductase	-
ABEF87_RS14610 (ABEF87_14610)	-	2960149..2961027 (-)	879	WP_034583777.1	pirin family protein	-
ABEF87_RS14615 (ABEF87_14615)	ahpC	2961278..2961841 (-)	564	WP_034583775.1	alkyl hydroperoxide reductase subunit C	-
ABEF87_RS14620 (ABEF87_14620)	-	2962005..2962439 (-)	435	WP_227504124.1	TetR/AcrR family transcriptional regulator	-
ABEF87_RS14625 (ABEF87_14625)	-	2962666..2962845 (-)	180	WP_034583772.1	hypothetical protein	-
ABEF87_RS14630 (ABEF87_14630)	-	2963567..2963947 (-)	381	Protein_2825	KGG domain-containing protein	-
ABEF87_RS14635 (ABEF87_14635)	-	2964343..2965305 (-)	963	WP_347455381.1	IS30-like element IS18 family transposase	-
ABEF87_RS14640 (ABEF87_14640)	ssb	2965599..2966174 (-)	576	WP_034588730.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 191 a.a.
• Molecular weight: 20691.52 Da
• Isoelectric Point: 6.4831

>NTDB_id=1002825 ABEF87_RS14640 WP_034588730.1 2965599..2966174(-) (ssb) [Acinetobacter thermotolerans strain ANC 7919]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRAQGGEQSDNGGFAQPRFNNNNQQGGYANQGGYGAPQQGGFNNNAPAGN
GYGNNPGGFAPKAAPAAVAAPAADLDDDLPF

Nucleotide

• Length: 576 bp

>NTDB_id=1002825 ABEF87_RS14640 WP_034588730.1 2965599..2966174(-) (ssb) [Acinetobacter thermotolerans strain ANC 7919]
ATGCGTGGTGTAAATAAGGTTATTTTGGTAGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCCAATGGGGGGTC
TCTCACTCAATTCTCTATCGCAACCAGCGAATCTTGGACGGACAAGAATACTGGCGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTATTGCACAACCGTCTAGGCGAAATCGCACAGCAGTACCTGCGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAGGAACGTTACACCACCGAAATTCGTGGTGAGCAGATGCAAAT
GCTGGATTCAGGCCGTGCCCAAGGTGGTGAACAGTCTGACAACGGTGGCTTTGCGCAACCGCGCTTTAACAACAATAACC
AGCAAGGTGGTTATGCGAATCAAGGCGGTTATGGCGCACCACAACAAGGTGGCTTTAACAATAATGCACCTGCAGGCAAT
GGCTATGGCAACAACCCGGGCGGTTTTGCACCAAAAGCAGCGCCAGCAGCAGTTGCAGCACCAGCAGCAGACTTAGATGA
CGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	54.688	100	0.55
ssb	Vibrio cholerae strain A1552	46.734	100	0.487
ssb	Neisseria gonorrhoeae MS11	40.526	99.476	0.403
ssb	Neisseria meningitidis MC58	40.426	98.429	0.398