Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABEF85_RS00860 | Genome accession | NZ_CP156776 |
| Coordinates | 190112..190687 (+) | Length | 191 a.a. |
| NCBI ID | WP_034588730.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7955 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 191676..211930 | 190112..190687 | flank | 989 |
| IScluster/Tn | 190881..192551 | 190112..190687 | flank | 194 |
Gene organization within MGE regions
Location: 190112..211930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF85_RS00860 (ABEF85_00860) | ssb | 190112..190687 (+) | 576 | WP_034588730.1 | single-stranded DNA-binding protein | Machinery gene |
| ABEF85_RS00865 (ABEF85_00865) | - | 190881..191543 (+) | 663 | WP_004783898.1 | IS1595-like element ISAcra1 family transposase | - |
| ABEF85_RS00870 (ABEF85_00870) | - | 191676..192551 (+) | 876 | WP_000102417.1 | IS982-like element ISAba825 family transposase | - |
| ABEF85_RS00875 (ABEF85_00875) | - | 192859..193038 (+) | 180 | WP_034583772.1 | hypothetical protein | - |
| ABEF85_RS00880 (ABEF85_00880) | - | 193221..194451 (+) | 1231 | Protein_170 | transposase | - |
| ABEF85_RS00885 (ABEF85_00885) | - | 194689..195123 (+) | 435 | WP_347453282.1 | TetR/AcrR family transcriptional regulator | - |
| ABEF85_RS00890 (ABEF85_00890) | ahpC | 195287..195850 (+) | 564 | WP_034583775.1 | alkyl hydroperoxide reductase subunit C | - |
| ABEF85_RS00895 (ABEF85_00895) | - | 196101..196979 (+) | 879 | WP_034583777.1 | pirin family protein | - |
| ABEF85_RS00900 (ABEF85_00900) | - | 197419..198726 (+) | 1308 | WP_034583780.1 | FAD-dependent oxidoreductase | - |
| ABEF85_RS00905 (ABEF85_00905) | - | 198729..199577 (+) | 849 | WP_034583782.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| ABEF85_RS00915 (ABEF85_00915) | - | 199959..200186 (-) | 228 | WP_034583795.1 | hypothetical protein | - |
| ABEF85_RS00925 (ABEF85_00925) | - | 201853..202407 (+) | 555 | WP_347453280.1 | DUF4145 domain-containing protein | - |
| ABEF85_RS00930 (ABEF85_00930) | - | 202515..202871 (-) | 357 | WP_347454643.1 | hypothetical protein | - |
| ABEF85_RS00940 (ABEF85_00940) | - | 203473..205353 (+) | 1881 | WP_034589169.1 | potassium transporter Kup | - |
| ABEF85_RS15310 | - | 205419..205802 (-) | 384 | WP_404798874.1 | hypothetical protein | - |
| ABEF85_RS00950 (ABEF85_00950) | - | 206068..207192 (+) | 1125 | WP_347453278.1 | DNA/RNA non-specific endonuclease | - |
| ABEF85_RS00955 (ABEF85_00955) | - | 207274..207519 (+) | 246 | WP_034589160.1 | hypothetical protein | - |
| ABEF85_RS00960 (ABEF85_00960) | aqpZ | 207590..208295 (-) | 706 | Protein_184 | aquaporin Z | - |
| ABEF85_RS00965 (ABEF85_00965) | - | 208347..209414 (-) | 1068 | WP_347464082.1 | AraC family transcriptional regulator ligand-binding domain-containing protein | - |
| ABEF85_RS00970 (ABEF85_00970) | - | 209519..210133 (+) | 615 | WP_034589156.1 | hypothetical protein | - |
| ABEF85_RS00975 (ABEF85_00975) | - | 210438..211496 (-) | 1059 | WP_034586922.1 | RNA-guided endonuclease TnpB family protein | - |
| ABEF85_RS00980 (ABEF85_00980) | tnpA | 211517..211930 (+) | 414 | WP_347454644.1 | IS200/IS605 family transposase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 20691.52 Da Isoelectric Point: 6.4831
>NTDB_id=1002619 ABEF85_RS00860 WP_034588730.1 190112..190687(+) (ssb) [Acinetobacter thermotolerans strain ANC 7955]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRAQGGEQSDNGGFAQPRFNNNNQQGGYANQGGYGAPQQGGFNNNAPAGN
GYGNNPGGFAPKAAPAAVAAPAADLDDDLPF
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRAQGGEQSDNGGFAQPRFNNNNQQGGYANQGGYGAPQQGGFNNNAPAGN
GYGNNPGGFAPKAAPAAVAAPAADLDDDLPF
Nucleotide
Download Length: 576 bp
>NTDB_id=1002619 ABEF85_RS00860 WP_034588730.1 190112..190687(+) (ssb) [Acinetobacter thermotolerans strain ANC 7955]
ATGCGTGGTGTAAATAAGGTTATTTTGGTAGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCCAATGGGGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGAATCTTGGACGGACAAGAATACTGGCGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTATTGCACAACCGTCTAGGCGAAATCGCACAGCAGTACCTGCGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAGGAACGTTACACCACCGAAATTCGTGGTGAGCAGATGCAAAT
GCTGGATTCAGGCCGTGCCCAAGGTGGTGAACAGTCTGACAACGGTGGCTTTGCGCAACCGCGCTTTAACAACAATAACC
AGCAAGGTGGTTATGCGAATCAAGGCGGTTATGGCGCACCACAACAAGGTGGCTTTAACAATAATGCACCTGCAGGCAAT
GGCTATGGCAACAACCCGGGCGGTTTTGCACCAAAAGCAGCGCCAGCAGCAGTTGCAGCACCAGCAGCAGACTTAGATGA
CGATTTACCGTTCTAG
ATGCGTGGTGTAAATAAGGTTATTTTGGTAGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCCAATGGGGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGAATCTTGGACGGACAAGAATACTGGCGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTATTGCACAACCGTCTAGGCGAAATCGCACAGCAGTACCTGCGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACAGACCAAAATGGTCAGGAACGTTACACCACCGAAATTCGTGGTGAGCAGATGCAAAT
GCTGGATTCAGGCCGTGCCCAAGGTGGTGAACAGTCTGACAACGGTGGCTTTGCGCAACCGCGCTTTAACAACAATAACC
AGCAAGGTGGTTATGCGAATCAAGGCGGTTATGGCGCACCACAACAAGGTGGCTTTAACAATAATGCACCTGCAGGCAAT
GGCTATGGCAACAACCCGGGCGGTTTTGCACCAAAAGCAGCGCCAGCAGCAGTTGCAGCACCAGCAGCAGACTTAGATGA
CGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
54.688 |
100 |
0.55 |
| ssb | Vibrio cholerae strain A1552 |
46.734 |
100 |
0.487 |
| ssb | Neisseria gonorrhoeae MS11 |
40.526 |
99.476 |
0.403 |
| ssb | Neisseria meningitidis MC58 |
40.426 |
98.429 |
0.398 |