Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AACH29_RS02090 Genome accession   NZ_AP027239
Coordinates   425906..428068 (+) Length   720 a.a.
NCBI ID   WP_231844111.1    Uniprot ID   -
Organism   Lactococcus garvieae strain L21-12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420906..433068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH29_RS02075 (LG21E12_04020) - 422235..423791 (+) 1557 WP_004259192.1 ABC-F family ATP-binding cassette domain-containing protein -
  AACH29_RS02080 (LG21E12_04030) - 423957..425132 (+) 1176 WP_004259189.1 SLC13 family permease -
  AACH29_RS02085 (LG21E12_04040) - 425190..425840 (+) 651 WP_014024335.1 helix-hairpin-helix domain-containing protein -
  AACH29_RS02090 comEC 425906..428068 (+) 2163 WP_231844111.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AACH29_RS02095 (LG21E12_04070) - 428223..428999 (+) 777 WP_014024338.1 alpha/beta hydrolase family protein -
  AACH29_RS02100 (LG21E12_04080) - 429195..429410 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  AACH29_RS02105 (LG21E12_04090) atpB 429465..430178 (+) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  AACH29_RS02110 (LG21E12_04100) atpF 430192..430698 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  AACH29_RS02115 (LG21E12_04110) - 430713..431240 (+) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  AACH29_RS02120 (LG21E12_04120) atpA 431306..432814 (+) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 82838.18 Da        Isoelectric Point: 9.5451

>NTDB_id=100216 AACH29_RS02090 WP_231844111.1 425906..428068(+) (comEC) [Lactococcus garvieae strain L21-12]
MFIFLFLVFHGLYLFLVSLVSSSLFIVNTIVLVLLLCFSLFLLMIKKETEVQERKQPEKISKITPYMDTLQVNGSRLSFR
GEVNGNDFQAFYTLTSEKEKEYFKKLAVKGTFYLEGTLEIPEEQRNFSGFDYRKYLRTQGVYRLLKIEKIYGFEEKQDFD
LRLVRRKAILWTQEHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIELLRNILLRLGLSQKLV
FFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSDRFSVTFLLLMVFSPYFLLTTGGQLTMLYSFLITFFSGKFKELK
GLKKSLLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLFGPALTLFNPFFIVLESIVRWV
GDLFDQPIVFGKPNLIFLLLLFMLSGLALDFYKKRNWNLSIIMVLFLLFFFVKNPKHPSITMVDVGQGDSILLQDSWNSQ
NILIDTGGRLKIRADEQWKEGIYKSNAENTLLPYLRARGVSKIDVLIVTHPDEDHIGDLESVAQKVPIKNVYVSASALEK
KSFAKKLSRLNSQIHIVKEGDKLPIFNSYLWFLTTGVEGKSDNDNSLVTFGEFYGKKFLFTGDLEEEGEMQLQEEYPHLE
VDVLKVGHHGSKTSSKETFLEAINPKLALISAGKNNRYKHPNQETLQQFAARGIKIYRTDQQGAIRLLYKKGSWHIQTVK

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=100216 AACH29_RS02090 WP_231844111.1 425906..428068(+) (comEC) [Lactococcus garvieae strain L21-12]
TTGTTTATTTTCTTATTTTTAGTTTTTCATGGCCTTTACTTATTCTTAGTCTCTTTAGTTTCTTCATCGCTTTTTATCGT
CAATACTATAGTGTTAGTTCTTTTACTGTGCTTTAGTTTATTCTTACTCATGATAAAAAAAGAAACGGAAGTACAAGAAA
GAAAGCAACCAGAAAAAATTTCGAAAATTACCCCTTATATGGATACACTTCAAGTAAATGGAAGCAGGCTCAGTTTCAGA
GGAGAAGTGAACGGCAACGACTTCCAAGCTTTTTACACCTTGACCTCGGAAAAAGAAAAAGAATACTTCAAAAAACTTGC
GGTGAAGGGGACTTTTTACCTTGAAGGCACTTTGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGGA
AGTATTTAAGGACTCAAGGGGTCTATCGTCTTCTTAAAATAGAAAAAATTTATGGATTTGAAGAAAAACAGGACTTTGAT
TTACGGCTGGTACGCCGAAAAGCCATTCTTTGGACTCAGGAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCT
TCTTTTTGGGTGGTTGGATAAAGACTTTGAAGAAATGGGGGAGCTTTACACTAGCCTTGGTATTATCCATTTATTTGCGC
TGTCAGGCATGCAGGTGAATTTTTTTATTGAACTTCTCCGAAATATTTTACTGCGGCTTGGCTTATCACAGAAGTTAGTC
TTTTTTATCCAAATTCCCTTTTCGATATTTTATGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGTGCGCTTCTTCA
AAAAAATATCCCCCTTAAAAATTCAAGCGATAGATTTTCTGTCACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCC
TGCTGACAACAGGAGGACAACTCACGATGCTTTATTCTTTCTTAATCACATTTTTTTCAGGAAAGTTCAAAGAACTAAAA
GGATTAAAAAAATCGTTACTTGATTCTACTGTCCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTCACTTCCATAGTTT
TCAGCCATTATCGATTATCTTGACTTTATTATTTAGTCTGATTTTTGATTTTTTACTTTTGCCAGGTTTACTTTTTGTTT
TTCTTCTTTCTTTATTCGGTCCTGCTCTCACGTTATTTAATCCTTTTTTTATTGTTTTAGAATCAATAGTAAGATGGGTG
GGCGATTTATTTGACCAGCCGATTGTCTTTGGCAAACCCAACCTTATTTTTTTACTTTTACTTTTTATGCTGAGTGGACT
TGCCCTTGATTTTTATAAAAAAAGAAACTGGAACTTGAGCATAATAATGGTTCTTTTCTTGCTTTTTTTCTTTGTTAAGA
ATCCTAAACACCCAAGCATTACAATGGTAGATGTGGGACAAGGGGACAGTATTCTTTTACAAGACAGTTGGAACAGCCAA
AACATCCTCATCGATACGGGCGGGAGATTAAAAATAAGAGCTGATGAGCAGTGGAAGGAGGGAATCTATAAGAGCAATGC
CGAAAATACACTTCTGCCTTATCTGAGAGCGCGTGGCGTGAGTAAGATAGATGTTCTGATTGTGACACATCCAGATGAGG
ATCATATTGGAGACCTGGAGAGTGTGGCTCAGAAAGTACCAATAAAAAATGTTTATGTGTCAGCTTCTGCATTGGAGAAG
AAAAGCTTTGCTAAAAAACTCAGCCGTTTAAACAGTCAGATTCACATTGTGAAGGAGGGGGACAAGCTCCCCATCTTTAA
CAGTTATCTCTGGTTTTTAACGACAGGTGTTGAAGGTAAAAGCGACAATGATAATTCTTTAGTGACATTTGGTGAATTTT
ATGGGAAGAAATTTCTTTTTACAGGCGACTTAGAAGAAGAGGGAGAGATGCAACTCCAGGAAGAATATCCCCATTTAGAG
GTGGATGTCCTAAAAGTTGGACATCATGGCAGTAAAACTTCTTCAAAGGAAACTTTTTTAGAAGCCATCAACCCTAAGCT
CGCTCTTATTTCGGCTGGAAAGAATAATCGATATAAACATCCCAATCAAGAAACGCTCCAACAATTCGCTGCACGAGGCA
TAAAAATTTATCGTACAGACCAGCAAGGAGCAATCCGTCTCCTTTATAAAAAAGGCAGTTGGCACATTCAAACAGTAAAG
TAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(465-673)

Domain of unknown function (DUF4131) (DUF4131)

(5-150)

Competence protein (Competence)

(187-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

52.891

98.472

0.521
  comEC/celB Streptococcus mitis SK321

44.898

100

0.458
  comEC/celB Streptococcus mitis NCTC 12261

44.587

97.5

0.435
  comEC/celB Streptococcus pneumoniae Rx1

44.239

97.639

0.432
  comEC/celB Streptococcus pneumoniae D39

44.239

97.639

0.432
  comEC/celB Streptococcus pneumoniae R6

44.239

97.639

0.432
  comEC/celB Streptococcus pneumoniae TIGR4

44.349

97.083

0.431

Multiple sequence alignment