Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EL147_RS08215 Genome accession   NZ_LR134341
Coordinates   1679162..1679842 (+) Length   226 a.a.
NCBI ID   WP_007891533.1    Uniprot ID   G5K820
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674162..1684842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS08190 (NCTC13786_01646) - 1675046..1675399 (+) 354 WP_007892969.1 S1 RNA-binding domain-containing protein -
  EL147_RS08195 (NCTC13786_01647) tnpA 1675587..1676042 (+) 456 WP_007896184.1 IS200/IS605 family transposase -
  EL147_RS08200 (NCTC13786_01648) cysK 1676108..1677073 (-) 966 WP_007891534.1 cysteine synthase A -
  EL147_RS08205 (NCTC13786_01649) - 1677186..1677815 (-) 630 WP_007891527.1 YigZ family protein -
  EL147_RS08210 (NCTC13786_01650) comFA/cflA 1677871..1679172 (+) 1302 WP_007891532.1 DEAD/DEAH box helicase Machinery gene
  EL147_RS08215 (NCTC13786_01651) comFC/cflB 1679162..1679842 (+) 681 WP_007891533.1 ComF family protein Machinery gene
  EL147_RS08220 (NCTC13786_01652) hpf 1679917..1680465 (+) 549 WP_007891529.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26374.78 Da        Isoelectric Point: 9.2749

>NTDB_id=1002134 EL147_RS08215 WP_007891533.1 1679162..1679842(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC13786]
MDHNCLLCGNRIEDSYSLLEIIFLMKEELIICQPCQKKFKRVDQKHCPACFKSGSAKLCYDCIEWNKKGYEVKHSAMFKY
NDYMKAYFSTYKFQGDYLLRKVFVKPLLKAVRKDYKEYVLVPIPVSPERTEIRGFNQVTAILEVAGCQFLPMISKVENEH
QSHRNKVQRLESANSFYANELTKKVQKNQKLLIIDDIYTTGTTIKHVRDVLIAEGFTNIKSFSIAR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1002134 EL147_RS08215 WP_007891533.1 1679162..1679842(+) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC13786]
ATGGATCATAATTGCCTTTTATGTGGAAATCGTATTGAAGACAGTTATTCTCTTTTAGAAATTATTTTTTTAATGAAAGA
GGAACTGATAATATGTCAACCTTGTCAAAAGAAGTTTAAACGAGTGGATCAGAAACATTGCCCAGCTTGTTTCAAATCTG
GGTCAGCTAAACTATGTTATGATTGTATTGAGTGGAACAAAAAAGGATATGAGGTTAAACATTCTGCTATGTTCAAATAT
AACGATTATATGAAAGCGTATTTTTCAACTTACAAATTTCAAGGGGACTATTTACTTAGAAAAGTTTTTGTAAAACCATT
ACTAAAAGCAGTAAGAAAAGATTATAAGGAATATGTGCTAGTACCGATCCCTGTCAGTCCAGAAAGGACAGAAATAAGAG
GATTTAATCAAGTAACAGCAATCCTGGAAGTGGCAGGCTGTCAATTTTTACCAATGATTAGTAAAGTGGAAAACGAGCAT
CAATCACACAGGAATAAGGTACAACGTTTAGAAAGTGCTAATAGCTTCTATGCTAATGAACTGACTAAAAAAGTTCAAAA
AAATCAAAAATTATTAATTATTGATGATATTTATACTACTGGAACGACGATAAAACATGTTAGAGACGTCCTTATTGCAG
AAGGCTTTACGAATATAAAAAGTTTCAGTATTGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K820

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.892

98.23

0.412
  comFC/cflB Streptococcus mitis SK321

41.441

98.23

0.407
  comFC/cflB Streptococcus pneumoniae TIGR4

40.991

98.23

0.403
  comFC/cflB Streptococcus pneumoniae Rx1

40.541

98.23

0.398
  comFC/cflB Streptococcus pneumoniae D39

40.541

98.23

0.398
  comFC/cflB Streptococcus pneumoniae R6

40.541

98.23

0.398