Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL147_RS06340 Genome accession   NZ_LR134341
Coordinates   1296151..1296744 (+) Length   197 a.a.
NCBI ID   WP_007893783.1    Uniprot ID   G5K7I2
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291151..1301744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS06320 - 1291736..1291915 (-) 180 WP_007893796.1 peptidase -
  EL147_RS06325 (NCTC13786_01265) - 1291900..1292799 (-) 900 WP_232010993.1 hypothetical protein -
  EL147_RS06330 (NCTC13786_01266) hexB 1292948..1294915 (+) 1968 WP_007893835.1 DNA mismatch repair endonuclease MutL Machinery gene
  EL147_RS06335 (NCTC13786_01267) - 1294926..1296149 (+) 1224 WP_007893804.1 MFS transporter -
  EL147_RS06340 (NCTC13786_01268) ruvA 1296151..1296744 (+) 594 WP_007893783.1 Holliday junction branch migration protein RuvA Machinery gene
  EL147_RS06345 (NCTC13786_01269) - 1296751..1297305 (+) 555 WP_007893754.1 DNA-3-methyladenine glycosylase I -
  EL147_RS06350 (NCTC13786_01270) cinA 1297421..1298680 (+) 1260 WP_007893844.1 competence/damage-inducible protein A Machinery gene
  EL147_RS06355 (NCTC13786_01271) recA 1298770..1299912 (+) 1143 WP_007893872.1 recombinase RecA Machinery gene
  EL147_RS06360 (NCTC13786_01272) spx 1300318..1300716 (+) 399 WP_007893913.1 transcriptional regulator Spx -
  EL147_RS06365 (NCTC13786_01273) - 1300828..1301097 (+) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  EL147_RS06370 (NCTC13786_01274) ruvX 1301094..1301513 (+) 420 WP_007893744.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21996.34 Da        Isoelectric Point: 6.1062

>NTDB_id=1002109 EL147_RS06340 WP_007893783.1 1296151..1296744(+) (ruvA) [Streptococcus pseudoporcinus strain NCTC13786]
MFDYIKGQLTKITAKYIVVEVNGLGYIIYVANPYSFTDSVNQNVTVYLHQVIREDAHLLFGFHTDDEKDVFLKLISVSGI
GPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVDNPEPGQQQSQAKRNSNHQLDEAIEALL
ALGYKATELKKIRAFFEGTEETAEQYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1002109 EL147_RS06340 WP_007893783.1 1296151..1296744(+) (ruvA) [Streptococcus pseudoporcinus strain NCTC13786]
ATGTTTGACTATATAAAAGGGCAATTAACAAAAATTACTGCTAAATATATTGTTGTAGAGGTAAATGGTCTAGGTTATAT
TATCTATGTGGCTAACCCTTATAGCTTTACAGATAGTGTCAACCAAAATGTGACTGTTTATCTGCATCAAGTGATTAGAG
AAGATGCTCATCTTTTATTTGGCTTTCATACGGATGATGAAAAGGATGTTTTTTTAAAACTCATTTCTGTTTCGGGTATT
GGTCCCATGACTGCTTTAGCTATTGTTGCTGTGGACGATAACCAGGGCTTGGTTACAGCTATTGACAATAGTGATATTAA
GTACTTAATGAAGTTCCCTAAAATTGGTAAAAAGACGGCACAGCAAATGATTCTCGACCTTGCTGGCAAGTTTGTGGACA
ATCCAGAGCCTGGTCAGCAGCAGAGCCAAGCTAAGCGAAATAGTAATCACCAGCTTGACGAAGCTATCGAGGCCCTCTTA
GCGCTAGGCTATAAAGCAACAGAGTTGAAGAAGATTAGGGCTTTCTTTGAAGGAACAGAGGAAACGGCTGAGCAGTATAT
CAAGTCAGCTTTGAAAATGTTAATGAAGGGGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K7I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.66
  ruvA Streptococcus pneumoniae R6

65.152

100

0.655
  ruvA Streptococcus pneumoniae D39

65.152

100

0.655
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426