Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ABC807_RS00280 Genome accession   NZ_CP156625
Coordinates   45807..46469 (+) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain TL7/1993     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 40807..51469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC807_RS00250 (ABC807_00250) tnpB 41366..41581 (+) 216 WP_000376909.1 IS66 family insertion sequence element accessory protein TnpB -
  ABC807_RS00255 (ABC807_00255) - 41722..42030 (-) 309 Protein_47 transposase -
  ABC807_RS00260 (ABC807_00260) - 42012..42541 (+) 530 Protein_48 transposase -
  ABC807_RS00265 (ABC807_00265) cysK 42616..43536 (-) 921 WP_000029866.1 cysteine synthase A -
  ABC807_RS00270 (ABC807_00270) - 43821..44456 (-) 636 WP_000395738.1 YigZ family protein -
  ABC807_RS00275 (ABC807_00275) comFA/cflA 44512..45810 (+) 1299 WP_000867591.1 DEAD/DEAH box helicase Machinery gene
  ABC807_RS00280 (ABC807_00280) comFC/cflB 45807..46469 (+) 663 WP_000649971.1 ComF family protein Machinery gene
  ABC807_RS00285 (ABC807_00285) raiA 46549..47097 (+) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  ABC807_RS00290 (ABC807_00290) - 47233..49206 (+) 1974 WP_000715116.1 DHH family phosphoesterase -
  ABC807_RS00295 (ABC807_00295) rplI 49203..49655 (+) 453 WP_000864220.1 50S ribosomal protein L9 -
  ABC807_RS00300 (ABC807_00300) dnaB 49699..51051 (+) 1353 WP_000852486.1 replicative DNA helicase -
  ABC807_RS00305 (ABC807_00305) - 51053..51319 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=1001799 ABC807_RS00280 WP_000649971.1 45807..46469(+) (comFC/cflB) [Streptococcus pneumoniae strain TL7/1993]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1001799 ABC807_RS00280 WP_000649971.1 45807..46469(+) (comFC/cflB) [Streptococcus pneumoniae strain TL7/1993]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment