Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V5734_RS11730 Genome accession   NZ_CP156081
Coordinates   2216234..2216734 (+) Length   166 a.a.
NCBI ID   WP_347309847.1    Uniprot ID   -
Organism   Defluviimonas sp. SAOS-178_SWC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2211234..2221734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5734_RS11705 (V5734_11705) - 2213546..2213833 (+) 288 WP_347309842.1 antibiotic biosynthesis monooxygenase -
  V5734_RS11710 (V5734_11710) - 2213921..2214526 (-) 606 WP_347309843.1 transglycosylase SLT domain-containing protein -
  V5734_RS11715 (V5734_11715) - 2214605..2215141 (-) 537 WP_347309844.1 helix-turn-helix transcriptional regulator -
  V5734_RS11720 (V5734_11720) - 2215138..2215674 (-) 537 WP_347309845.1 cytochrome b/b6 domain-containing protein -
  V5734_RS11725 (V5734_11725) - 2215738..2215992 (-) 255 WP_347309846.1 PepSY domain-containing protein -
  V5734_RS11730 (V5734_11730) ssb 2216234..2216734 (+) 501 WP_347309847.1 single-stranded DNA-binding protein Machinery gene
  V5734_RS11735 (V5734_11735) aroB 2216819..2217934 (-) 1116 WP_347309848.1 3-dehydroquinate synthase -
  V5734_RS11740 (V5734_11740) - 2217931..2218476 (-) 546 WP_347309849.1 shikimate kinase -
  V5734_RS11745 (V5734_11745) - 2218704..2218838 (+) 135 WP_347313705.1 hypothetical protein -
  V5734_RS11750 (V5734_11750) - 2218825..2220384 (+) 1560 WP_347309850.1 hypothetical protein -
  V5734_RS11755 (V5734_11755) - 2220389..2221324 (+) 936 WP_347309851.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17582.15 Da        Isoelectric Point: 5.2939

>NTDB_id=1001685 V5734_RS11730 WP_347309847.1 2216234..2216734(+) (ssb) [Defluviimonas sp. SAOS-178_SWC]
MAGSVNKVILVGNLGRDPEVRSFQNGGKVCNLRIATSETWRDRNTGERKDRTEWHSVAIFQEGLVKVAEQYLRKGSKVYI
EGQLQTRKWQDQNGQDRYSTEVVLQGFNGTLVMLDGRDGGSGGGGGGFDDDRSGGGYGGGGSGGGYGGGSSSSGGGRPDL
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1001685 V5734_RS11730 WP_347309847.1 2216234..2216734(+) (ssb) [Defluviimonas sp. SAOS-178_SWC]
ATGGCGGGGTCAGTGAACAAGGTCATTCTGGTCGGAAATCTCGGCCGCGATCCGGAAGTGCGGTCGTTCCAGAATGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACGTCCGAGACCTGGCGCGACCGCAATACCGGAGAGCGCAAGGACCGGACCGAAT
GGCATTCGGTCGCGATCTTTCAGGAAGGTCTGGTGAAGGTCGCGGAACAGTACCTGCGCAAGGGCTCCAAGGTCTATATC
GAGGGGCAGTTGCAGACCCGAAAATGGCAGGACCAGAACGGTCAGGACCGCTATTCGACCGAAGTGGTACTTCAGGGCTT
CAATGGCACACTGGTGATGCTCGATGGCCGCGATGGCGGTTCGGGCGGTGGCGGCGGCGGCTTCGACGACGACCGCTCCG
GGGGCGGCTACGGTGGTGGTGGCTCGGGCGGCGGCTACGGCGGCGGATCGAGCAGCAGCGGCGGCGGCAGGCCGGATCTC
GACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.179

100

0.554
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.536
  ssb Neisseria gonorrhoeae MS11

44.231

93.976

0.416
  ssb Neisseria meningitidis MC58

50.413

72.892

0.367

Multiple sequence alignment