Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABFG87_RS17265 Genome accession   NZ_CP156074
Coordinates   3679789..3680310 (-) Length   173 a.a.
NCBI ID   WP_136774391.1    Uniprot ID   A0A4U0PKP7
Organism   Chitiniphilus eburneus strain YS-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3676563..3686392 3679789..3680310 within 0


Gene organization within MGE regions


Location: 3676563..3686392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS17245 - 3677174..3677509 (+) 336 WP_136774413.1 helix-turn-helix transcriptional regulator -
  ABFG87_RS17250 - 3677528..3678004 (+) 477 WP_136774393.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ABFG87_RS17255 - 3678137..3678550 (+) 414 WP_136774392.1 arsenate reductase ArsC -
  ABFG87_RS17260 arsB 3678562..3679635 (+) 1074 WP_375591801.1 ACR3 family arsenite efflux transporter -
  ABFG87_RS17265 ssb 3679789..3680310 (-) 522 WP_136774391.1 single-stranded DNA-binding protein Machinery gene
  ABFG87_RS17270 - 3680313..3681692 (-) 1380 WP_211243488.1 MFS transporter -
  ABFG87_RS17275 uvrA 3682084..3684942 (+) 2859 WP_136774390.1 excinuclease ABC subunit UvrA -
  ABFG87_RS17280 - 3685516..3685806 (+) 291 WP_136774389.1 hypothetical protein -
  ABFG87_RS17285 - 3685865..3686392 (-) 528 WP_136774388.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18981.07 Da        Isoelectric Point: 5.9404

>NTDB_id=1001644 ABFG87_RS17265 WP_136774391.1 3679789..3680310(-) (ssb) [Chitiniphilus eburneus strain YS-30]
MASLNKVLLIGNLGRDPEVRYLPSGGAVCNFSIATTERFKDKQGQQQEKTEWHNIVMYNRLAEIAGEYLKKGSSVYIEGR
IQTRKWQDKQTGADRYTTEIVADQMQMLSGRGGAGGGAGGGFQQGGDDFNQEYSQAPAPAARPQQQARPQQAAPAPRPAA
PKNFDDFEDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1001644 ABFG87_RS17265 WP_136774391.1 3679789..3680310(-) (ssb) [Chitiniphilus eburneus strain YS-30]
ATGGCATCGCTGAACAAGGTCCTACTCATCGGCAACCTGGGGCGCGACCCCGAGGTGCGCTACCTGCCCAGCGGCGGTGC
GGTCTGCAATTTCAGCATCGCCACCACCGAGCGCTTCAAGGACAAGCAGGGCCAGCAGCAGGAAAAGACCGAGTGGCACA
ACATCGTCATGTATAACCGCCTGGCCGAAATTGCCGGCGAATACCTGAAGAAGGGCAGCTCGGTGTATATCGAAGGCCGT
ATCCAGACCCGCAAGTGGCAGGACAAGCAGACCGGCGCCGACCGCTATACCACCGAAATCGTTGCCGACCAGATGCAGAT
GCTGTCCGGCCGTGGCGGCGCGGGCGGTGGTGCGGGTGGCGGCTTCCAGCAAGGTGGCGACGACTTCAACCAGGAATACA
GCCAGGCCCCGGCGCCGGCCGCCCGCCCGCAGCAGCAGGCCCGCCCGCAACAGGCCGCCCCGGCCCCGCGCCCGGCCGCG
CCGAAGAACTTCGACGATTTCGAGGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U0PKP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.696

100

0.572
  ssb Neisseria meningitidis MC58

52.717

100

0.561
  ssb Neisseria gonorrhoeae MS11

54.237

100

0.555
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.509

Multiple sequence alignment