Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EL130_RS04275 Genome accession   NZ_LR134320
Coordinates   831273..831938 (+) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 826273..836938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS04255 (NCTC10832_00809) - 826831..827922 (+) 1092 WP_002267044.1 glycerol dehydrogenase -
  EL130_RS04260 (NCTC10832_00810) cysK 828256..829182 (-) 927 WP_002263028.1 cysteine synthase A -
  EL130_RS04265 (NCTC10832_00811) - 829273..829902 (-) 630 WP_002283396.1 YigZ family protein -
  EL130_RS04270 (NCTC10832_00812) comFA/cflA 829975..831276 (+) 1302 WP_002283397.1 DEAD/DEAH box helicase Machinery gene
  EL130_RS04275 (NCTC10832_00813) comFC/cflB 831273..831938 (+) 666 WP_002270131.1 ComF family protein Machinery gene
  EL130_RS04280 (NCTC10832_00814) hpf 832017..832565 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EL130_RS04285 (NCTC10832_00815) - 832689..833783 (+) 1095 WP_002264404.1 hypothetical protein -
  EL130_RS04290 (NCTC10832_00816) - 833803..835503 (+) 1701 WP_002296115.1 zinc ribbon domain-containing protein -
  EL130_RS04295 (NCTC10832_00817) - 835583..836218 (-) 636 WP_002272863.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=1001572 EL130_RS04275 WP_002270131.1 831273..831938(+) (comFC/cflB) [Streptococcus mutans strain NCTC10832]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1001572 EL130_RS04275 WP_002270131.1 831273..831938(+) (comFC/cflB) [Streptococcus mutans strain NCTC10832]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439