Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABFV68_RS16520 Genome accession   NZ_CP156029
Coordinates   3372952..3373641 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CH1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367952..3378641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS16485 (ABFV68_16485) - 3368149..3368631 (-) 483 WP_346987974.1 flagellar protein FlgN -
  ABFV68_RS16490 (ABFV68_16490) flgM 3368646..3368912 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFV68_RS16495 (ABFV68_16495) - 3368982..3369401 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ABFV68_RS16500 (ABFV68_16500) comFC 3369475..3370164 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ABFV68_RS16505 (ABFV68_16505) - 3370170..3370454 (-) 285 WP_007407481.1 competence protein ComFB -
  ABFV68_RS16510 (ABFV68_16510) comFA 3370512..3371897 (-) 1386 WP_108725276.1 DEAD/DEAH box helicase Machinery gene
  ABFV68_RS16515 (ABFV68_16515) - 3372006..3372854 (-) 849 WP_007407483.1 DegV family protein -
  ABFV68_RS16520 (ABFV68_16520) degU 3372952..3373641 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFV68_RS16525 (ABFV68_16525) degS 3373718..3374881 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABFV68_RS16530 (ABFV68_16530) - 3375104..3375751 (+) 648 WP_007614107.1 YigZ family protein -
  ABFV68_RS16535 (ABFV68_16535) - 3375756..3376976 (+) 1221 WP_007407486.1 LCP family protein -
  ABFV68_RS16540 (ABFV68_16540) - 3377075..3378151 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1001410 ABFV68_RS16520 WP_003219701.1 3372952..3373641(-) (degU) [Bacillus velezensis strain CH1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1001410 ABFV68_RS16520 WP_003219701.1 3372952..3373641(-) (degU) [Bacillus velezensis strain CH1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment