Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABFV68_RS16510 Genome accession   NZ_CP156029
Coordinates   3370512..3371897 (-) Length   461 a.a.
NCBI ID   WP_108725276.1    Uniprot ID   -
Organism   Bacillus velezensis strain CH1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365512..3376897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS16475 (ABFV68_16475) flgL 3365687..3366604 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ABFV68_RS16480 (ABFV68_16480) flgK 3366616..3368133 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  ABFV68_RS16485 (ABFV68_16485) - 3368149..3368631 (-) 483 WP_346987974.1 flagellar protein FlgN -
  ABFV68_RS16490 (ABFV68_16490) flgM 3368646..3368912 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFV68_RS16495 (ABFV68_16495) - 3368982..3369401 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ABFV68_RS16500 (ABFV68_16500) comFC 3369475..3370164 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ABFV68_RS16505 (ABFV68_16505) - 3370170..3370454 (-) 285 WP_007407481.1 competence protein ComFB -
  ABFV68_RS16510 (ABFV68_16510) comFA 3370512..3371897 (-) 1386 WP_108725276.1 DEAD/DEAH box helicase Machinery gene
  ABFV68_RS16515 (ABFV68_16515) - 3372006..3372854 (-) 849 WP_007407483.1 DegV family protein -
  ABFV68_RS16520 (ABFV68_16520) degU 3372952..3373641 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFV68_RS16525 (ABFV68_16525) degS 3373718..3374881 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABFV68_RS16530 (ABFV68_16530) - 3375104..3375751 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52770.17 Da        Isoelectric Point: 10.2458

>NTDB_id=1001409 ABFV68_RS16510 WP_108725276.1 3370512..3371897(-) (comFA) [Bacillus velezensis strain CH1]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1001409 ABFV68_RS16510 WP_108725276.1 3370512..3371897(-) (comFA) [Bacillus velezensis strain CH1]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment