Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABFV68_RS16500 Genome accession   NZ_CP156029
Coordinates   3369475..3370164 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain CH1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3364475..3375164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS16465 (ABFV68_16465) fliW 3364565..3364996 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ABFV68_RS16470 (ABFV68_16470) - 3365026..3365595 (-) 570 WP_007407476.1 DUF6470 family protein -
  ABFV68_RS16475 (ABFV68_16475) flgL 3365687..3366604 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ABFV68_RS16480 (ABFV68_16480) flgK 3366616..3368133 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  ABFV68_RS16485 (ABFV68_16485) - 3368149..3368631 (-) 483 WP_346987974.1 flagellar protein FlgN -
  ABFV68_RS16490 (ABFV68_16490) flgM 3368646..3368912 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFV68_RS16495 (ABFV68_16495) - 3368982..3369401 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ABFV68_RS16500 (ABFV68_16500) comFC 3369475..3370164 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ABFV68_RS16505 (ABFV68_16505) - 3370170..3370454 (-) 285 WP_007407481.1 competence protein ComFB -
  ABFV68_RS16510 (ABFV68_16510) comFA 3370512..3371897 (-) 1386 WP_108725276.1 DEAD/DEAH box helicase Machinery gene
  ABFV68_RS16515 (ABFV68_16515) - 3372006..3372854 (-) 849 WP_007407483.1 DegV family protein -
  ABFV68_RS16520 (ABFV68_16520) degU 3372952..3373641 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFV68_RS16525 (ABFV68_16525) degS 3373718..3374881 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=1001408 ABFV68_RS16500 WP_198161198.1 3369475..3370164(-) (comFC) [Bacillus velezensis strain CH1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1001408 ABFV68_RS16500 WP_198161198.1 3369475..3370164(-) (comFC) [Bacillus velezensis strain CH1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTATTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCAAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment