Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABFV68_RS11695 Genome accession   NZ_CP156029
Coordinates   2433196..2434266 (-) Length   356 a.a.
NCBI ID   WP_012117985.1    Uniprot ID   A0A411A7V3
Organism   Bacillus velezensis strain CH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2428196..2439266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS11645 (ABFV68_11645) - 2428256..2428840 (-) 585 WP_007408328.1 signal peptidase I -
  ABFV68_RS11650 (ABFV68_11650) tapA 2428812..2429483 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  ABFV68_RS11655 (ABFV68_11655) - 2429742..2430071 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  ABFV68_RS11660 (ABFV68_11660) - 2430111..2430290 (-) 180 WP_003153093.1 YqzE family protein -
  ABFV68_RS11665 (ABFV68_11665) comGG 2430347..2430724 (-) 378 WP_007408325.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABFV68_RS11670 (ABFV68_11670) comGF 2430725..2431225 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  ABFV68_RS11675 (ABFV68_11675) comGE 2431134..2431448 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  ABFV68_RS11680 (ABFV68_11680) comGD 2431432..2431869 (-) 438 WP_346987922.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABFV68_RS11685 (ABFV68_11685) comGC 2431859..2432167 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  ABFV68_RS11690 (ABFV68_11690) comGB 2432172..2433209 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABFV68_RS11695 (ABFV68_11695) comGA 2433196..2434266 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  ABFV68_RS11700 (ABFV68_11700) - 2434458..2435408 (-) 951 WP_032870601.1 magnesium transporter CorA family protein -
  ABFV68_RS11705 (ABFV68_11705) - 2435554..2436855 (+) 1302 WP_346987923.1 hemolysin family protein -
  ABFV68_RS11710 (ABFV68_11710) - 2436893..2437723 (-) 831 WP_015240214.1 STAS domain-containing protein -
  ABFV68_RS11720 (ABFV68_11720) - 2437930..2438310 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABFV68_RS11725 (ABFV68_11725) - 2438547..2438792 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.86 Da        Isoelectric Point: 9.4784

>NTDB_id=1001390 ABFV68_RS11695 WP_012117985.1 2433196..2434266(-) (comGA) [Bacillus velezensis strain CH1]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1001390 ABFV68_RS11695 WP_012117985.1 2433196..2434266(-) (comGA) [Bacillus velezensis strain CH1]
GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCTGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment