Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL139_RS03845 Genome accession   NZ_LR134316
Coordinates   719631..720224 (+) Length   197 a.a.
NCBI ID   WP_111717760.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714631..725224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS03835 (NCTC6181_00781) hexB 716416..718398 (+) 1983 WP_111717762.1 DNA mismatch repair endonuclease MutL Machinery gene
  EL139_RS03840 (NCTC6181_00782) - 718409..719629 (+) 1221 WP_111717761.1 MFS transporter -
  EL139_RS03845 (NCTC6181_00783) ruvA 719631..720224 (+) 594 WP_111717760.1 Holliday junction branch migration protein RuvA Machinery gene
  EL139_RS03850 (NCTC6181_00784) - 720234..720806 (+) 573 WP_111717759.1 DNA-3-methyladenine glycosylase I -
  EL139_RS03855 (NCTC6181_00785) - 720809..721096 (+) 288 Protein_715 VOC family protein -
  EL139_RS03860 (NCTC6181_00786) cinA 721286..722557 (+) 1272 WP_111717758.1 competence/damage-inducible protein A Machinery gene
  EL139_RS03865 (NCTC6181_00787) recA 722662..723798 (+) 1137 WP_111717757.1 recombinase RecA Machinery gene
  EL139_RS03870 (NCTC6181_00788) spx 724091..724489 (+) 399 WP_003053105.1 transcriptional regulator Spx -
  EL139_RS03875 (NCTC6181_00789) - 724601..724870 (+) 270 WP_003045720.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21756.02 Da        Isoelectric Point: 5.7364

>NTDB_id=1001345 EL139_RS03845 WP_111717760.1 719631..720224(+) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLEEAIEALL
ALGYKATELKKIRAFFEGTSDTAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1001345 EL139_RS03845 WP_111717760.1 719631..720224(+) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACTAATGGACTAGGTTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGAGGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAAGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGAGGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGATACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Streptococcus pneumoniae R6

69.036

100

0.69
  ruvA Streptococcus pneumoniae D39

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411