Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BAMY6639_RS04085 Genome accession   NZ_CP006058
Coordinates   877801..878496 (-) Length   231 a.a.
NCBI ID   WP_032866595.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872801..883496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS04055 (BAMY6639_04280) - 872816..873619 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  BAMY6639_RS04060 (BAMY6639_04285) minD 873747..874550 (-) 804 WP_016938784.1 septum site-determining protein MinD -
  BAMY6639_RS04065 (BAMY6639_04290) minC 874553..875233 (-) 681 WP_031378910.1 septum site-determining protein MinC -
  BAMY6639_RS04070 (BAMY6639_04295) mreD 875287..875805 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  BAMY6639_RS04075 (BAMY6639_04300) mreC 875802..876665 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BAMY6639_RS04080 (BAMY6639_04305) mreB 876696..877709 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAMY6639_RS04085 (BAMY6639_04310) ysxA/radC 877801..878496 (-) 696 WP_032866595.1 RadC family protein Machinery gene
  BAMY6639_RS04090 (BAMY6639_04315) - 878528..879097 (-) 570 WP_015417926.1 Maf family protein -
  BAMY6639_RS04095 (BAMY6639_04320) - 879238..880239 (-) 1002 WP_061860762.1 SPOR domain-containing protein -
  BAMY6639_RS04100 (BAMY6639_04325) comC 880366..881118 (-) 753 WP_061860763.1 prepilin peptidase Machinery gene
  BAMY6639_RS04105 (BAMY6639_04330) - 881258..882550 (-) 1293 WP_061860764.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26096.30 Da        Isoelectric Point: 9.1560

>NTDB_id=100130 BAMY6639_RS04085 WP_032866595.1 877801..878496(-) (ysxA/radC) [Bacillus amyloliquefaciens UMAF6639]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLYECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=100130 BAMY6639_RS04085 WP_032866595.1 877801..878496(-) (ysxA/radC) [Bacillus amyloliquefaciens UMAF6639]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTATGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.446

100

0.874
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment