Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU23_RS05280 Genome accession   NZ_CP156014
Coordinates   1261105..1262499 (-) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris pv. raphani strain 0719     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256105..1267499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU23_RS05260 (ABFU23_05245) - 1256396..1257190 (+) 795 WP_076057322.1 glycosyltransferase family A protein -
  ABFU23_RS05265 (ABFU23_05250) - 1257187..1258233 (+) 1047 WP_081390738.1 glycosyltransferase family 2 protein -
  ABFU23_RS05270 (ABFU23_05255) - 1258226..1258864 (+) 639 WP_076054160.1 methionine biosynthesis protein MetW -
  ABFU23_RS05275 (ABFU23_05260) pilB 1258968..1260701 (+) 1734 WP_076054161.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU23_RS05280 (ABFU23_05265) pilR 1261105..1262499 (-) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU23_RS05285 (ABFU23_05270) - 1262708..1264318 (-) 1611 WP_076054166.1 PAS domain-containing sensor histidine kinase -
  ABFU23_RS05290 (ABFU23_05275) sucC 1264552..1265721 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU23_RS05295 (ABFU23_05280) sucD 1265746..1266621 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU23_RS05300 (ABFU23_05285) - 1266790..1267284 (-) 495 WP_204243856.1 substrate binding domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=1001201 ABFU23_RS05280 WP_042594919.1 1261105..1262499(-) (pilR) [Xanthomonas campestris pv. raphani strain 0719]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1001201 ABFU23_RS05280 WP_042594919.1 1261105..1262499(-) (pilR) [Xanthomonas campestris pv. raphani strain 0719]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGTGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCACGGCCGCCCGATCCCATTGCTCACCCAGTCCGCGCTCGA
TGCCTTGAACCAATACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATTCTCGAACGTGCGCTTGCCCTGGCAGAAG
ATGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTACCCTCCTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAAACTGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment