Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   EL107_RS07170 Genome accession   NZ_LR134314
Coordinates   1423296..1423580 (-) Length   94 a.a.
NCBI ID   WP_027968839.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418296..1428580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL107_RS07140 (NCTC8302_01414) proC 1418905..1419675 (+) 771 WP_011184092.1 pyrroline-5-carboxylate reductase -
  EL107_RS07145 - 1419758..1420066 (-) 309 WP_011017251.1 hypothetical protein -
  EL107_RS07150 (NCTC8302_01415) - 1420253..1421449 (-) 1197 WP_002986533.1 acetate kinase -
  EL107_RS07155 (NCTC8302_01416) comGH 1421508..1422461 (-) 954 WP_021340467.1 class I SAM-dependent methyltransferase Machinery gene
  EL107_RS07160 (NCTC8302_01417) comGG 1422559..1422885 (-) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  EL107_RS07165 (NCTC8302_01418) comGF 1422869..1423303 (-) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL107_RS07170 (NCTC8302_01419) comGE 1423296..1423580 (-) 285 WP_027968839.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL107_RS07175 (NCTC8302_01420) comGD 1423537..1423965 (-) 429 WP_011184089.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL107_RS07180 (NCTC8302_01421) comGC 1423940..1424266 (-) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  EL107_RS07185 (NCTC8302_01422) comGB 1424268..1425302 (-) 1035 WP_011184088.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL107_RS07190 (NCTC8302_01423) comGA 1425238..1426176 (-) 939 WP_002986557.1 competence type IV pilus ATPase ComGA Machinery gene
  EL107_RS07195 (NCTC8302_01424) - 1426269..1426634 (-) 366 WP_002986560.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10617.54 Da        Isoelectric Point: 8.0182

>NTDB_id=1001202 EL107_RS07170 WP_027968839.1 1423296..1423580(-) (comGE) [Streptococcus pyogenes strain NCTC8302]
MGIIKKQVKAYIALESMIATGILFSIVILVLSSLQQSQAALTYYRKQQEKLNLALMAVQTRTKEMTLNGCHITILRTDTY
ISIHDDEGEVMKIE

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1001202 EL107_RS07170 WP_027968839.1 1423296..1423580(-) (comGE) [Streptococcus pyogenes strain NCTC8302]
GTGGGAATTATCAAAAAACAAGTCAAAGCTTACATAGCCCTTGAAAGTATGATCGCAACAGGCATCCTCTTTAGTATTGT
CATTCTCGTCTTAAGCAGTTTACAGCAGAGTCAGGCTGCTCTAACGTACTATCGAAAGCAGCAAGAAAAGCTTAATCTAG
CCTTGATGGCAGTACAAACTAGAACTAAAGAGATGACATTGAATGGTTGTCATATTACTATTTTACGTACGGATACATAT
ATTAGTATTCACGATGACGAAGGAGAAGTGATGAAGATTGAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(12-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

38.298

100

0.383