Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EL107_RS05390 Genome accession   NZ_LR134314
Coordinates   1055586..1056065 (-) Length   159 a.a.
NCBI ID   WP_011285164.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8302     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050586..1061065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL107_RS05370 (NCTC8302_01075) - 1050755..1051360 (-) 606 WP_002982799.1 response regulator -
  EL107_RS05375 (NCTC8302_01076) - 1051341..1052903 (-) 1563 WP_011184956.1 ATP-binding protein -
  EL107_RS05380 (NCTC8302_01077) - 1052943..1054850 (-) 1908 WP_011184957.1 FtsX-like permease family protein -
  EL107_RS05385 (NCTC8302_01078) - 1054852..1055589 (-) 738 WP_011184958.1 ABC transporter ATP-binding protein -
  EL107_RS05390 (NCTC8302_01079) comA/nlmT 1055586..1056065 (-) 480 WP_011285164.1 ABC transporter ATP-binding protein Regulator
  EL107_RS05395 (NCTC8302_01080) - 1056121..1057746 (-) 1626 WP_011184960.1 DUF4135 domain-containing protein -
  EL107_RS05400 (NCTC8302_01081) - 1057830..1057985 (-) 156 WP_027968842.1 type A2 lanthipeptide -
  EL107_RS05405 (NCTC8302_01082) lacG 1058492..1059898 (-) 1407 WP_011184962.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18490.13 Da        Isoelectric Point: 6.6371

>NTDB_id=1001179 EL107_RS05390 WP_011285164.1 1055586..1056065(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC8302]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1001179 EL107_RS05390 WP_011285164.1 1055586..1056065(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC8302]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCAGGAGTATGCCAATGAAGTTTCATACTCCACTTTTTCGAGATAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAACTTGTAACCACCCCTAGAATCTTAGTTCTTGACGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATT
ATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.94

93.711

0.384
  rcrQ Streptococcus mutans UA159

37.975

99.371

0.377
  comA Streptococcus mitis NCTC 12261

39.597

93.711

0.371
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365