Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU29_RS17220 Genome accession   NZ_CP156001
Coordinates   3896450..3897508 (-) Length   352 a.a.
NCBI ID   WP_345785629.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6753     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3891450..3902508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU29_RS17200 (ABFU29_17165) - 3892495..3894459 (-) 1965 WP_349753676.1 type IV pilus secretin PilQ family protein -
  ABFU29_RS17205 (ABFU29_17170) - 3894479..3895012 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU29_RS17210 (ABFU29_17175) - 3895009..3895674 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  ABFU29_RS17215 (ABFU29_17180) - 3895671..3896450 (-) 780 WP_228442753.1 PilN domain-containing protein -
  ABFU29_RS17220 (ABFU29_17185) comM 3896450..3897508 (-) 1059 WP_345785629.1 pilus assembly protein PilM Machinery gene
  ABFU29_RS17225 (ABFU29_17190) - 3897724..3900150 (+) 2427 WP_014508818.1 penicillin-binding protein 1A -
  ABFU29_RS17230 (ABFU29_17195) - 3900586..3901236 (+) 651 WP_042597625.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37634.26 Da        Isoelectric Point: 4.3924

>NTDB_id=1001019 ABFU29_RS17220 WP_345785629.1 3896450..3897508(-) (comM) [Xanthomonas campestris pv. raphani strain bglFP 6753]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVIANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1001019 ABFU29_RS17220 WP_345785629.1 3896450..3897508(-) (comM) [Xanthomonas campestris pv. raphani strain bglFP 6753]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
ACGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGTTGGCGGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGTTGGAGCTCGGT
GGGCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTCATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GTTGCGCGGCGTTGTCGCGCCTGCCCGAGATGGTGGAAGAACAGCTGGGCGTGACTACCGTAATCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469

Multiple sequence alignment