Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU56_RS05030 Genome accession   NZ_CP155998
Coordinates   1166458..1167516 (+) Length   352 a.a.
NCBI ID   WP_057671588.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain LMG 00574     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161458..1172516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU56_RS05015 (ABFU56_05005) - 1162587..1163237 (-) 651 WP_011038337.1 hypothetical protein -
  ABFU56_RS05025 (ABFU56_05015) - 1163816..1166242 (-) 2427 WP_019237291.1 penicillin-binding protein 1A -
  ABFU56_RS05030 (ABFU56_05020) comM 1166458..1167516 (+) 1059 WP_057671588.1 pilus assembly protein PilM Machinery gene
  ABFU56_RS05035 (ABFU56_05025) - 1167516..1168286 (+) 771 WP_011038334.1 PilN domain-containing protein -
  ABFU56_RS05040 (ABFU56_05030) - 1168283..1168948 (+) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  ABFU56_RS05045 (ABFU56_05035) - 1168945..1169478 (+) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU56_RS05050 (ABFU56_05040) - 1169498..1171444 (+) 1947 WP_011038331.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37635.21 Da        Isoelectric Point: 4.3924

>NTDB_id=1000951 ABFU56_RS05030 WP_057671588.1 1166458..1167516(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 00574]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKQIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1000951 ABFU56_RS05030 WP_057671588.1 1166458..1167516(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 00574]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAGCCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCAGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCAGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
TGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTCAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAACCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGTGTTGATTGCATCGTGCTGGCAGGCG
GCTGCGCGGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment