Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU33_RS04570 Genome accession   NZ_CP155983
Coordinates   1089320..1090378 (+) Length   352 a.a.
NCBI ID   WP_076053982.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain LMG 07505     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1084320..1095378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU33_RS04555 (ABFU33_04550) - 1085477..1086097 (-) 621 WP_076053980.1 hypothetical protein -
  ABFU33_RS04565 (ABFU33_04560) - 1086678..1089104 (-) 2427 WP_019237291.1 penicillin-binding protein 1A -
  ABFU33_RS04570 (ABFU33_04565) comM 1089320..1090378 (+) 1059 WP_076053982.1 pilus assembly protein PilM Machinery gene
  ABFU33_RS04575 (ABFU33_04570) - 1090378..1091136 (+) 759 WP_076053984.1 PilN domain-containing protein -
  ABFU33_RS04580 (ABFU33_04575) - 1091133..1091798 (+) 666 WP_076053986.1 type 4a pilus biogenesis protein PilO -
  ABFU33_RS04585 (ABFU33_04580) - 1091795..1092328 (+) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU33_RS04590 (ABFU33_04585) - 1092348..1094219 (+) 1872 WP_076053989.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37634.26 Da        Isoelectric Point: 4.3924

>NTDB_id=1000700 ABFU33_RS04570 WP_076053982.1 1089320..1090378(+) (comM) [Xanthomonas campestris pv. raphani strain LMG 07505]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1000700 ABFU33_RS04570 WP_076053982.1 1089320..1090378(+) (comM) [Xanthomonas campestris pv. raphani strain LMG 07505]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGCTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATTACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
TGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTCAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGATCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment