Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU58_RS04515 Genome accession   NZ_CP155980
Coordinates   1082718..1083776 (+) Length   352 a.a.
NCBI ID   WP_016944654.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain CFBP 6579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1077718..1088776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU58_RS04505 (ABFU58_04500) - 1078987..1079637 (-) 651 WP_274318233.1 hypothetical protein -
  ABFU58_RS04510 (ABFU58_04505) - 1080076..1082502 (-) 2427 WP_175611674.1 penicillin-binding protein 1A -
  ABFU58_RS04515 (ABFU58_04510) comM 1082718..1083776 (+) 1059 WP_016944654.1 pilus assembly protein PilM Machinery gene
  ABFU58_RS04520 (ABFU58_04515) - 1083776..1084555 (+) 780 WP_237349743.1 PilN domain-containing protein -
  ABFU58_RS04525 (ABFU58_04520) - 1084552..1085217 (+) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  ABFU58_RS04530 (ABFU58_04525) - 1085214..1085747 (+) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU58_RS04535 (ABFU58_04530) - 1085767..1087647 (+) 1881 WP_100665834.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37620.24 Da        Isoelectric Point: 4.3924

>NTDB_id=1000647 ABFU58_RS04515 WP_016944654.1 1082718..1083776(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6579]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1000647 ABFU58_RS04515 WP_016944654.1 1082718..1083776(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6579]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGCTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGTGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGACAGTGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGTTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAGAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
TGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCCGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGACCTATGAGGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTTGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment