Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU48_RS04645 Genome accession   NZ_CP155976
Coordinates   1099127..1100185 (+) Length   352 a.a.
NCBI ID   WP_336624848.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 0516     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1094127..1105185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU48_RS04635 (ABFU48_04630) - 1095399..1096049 (-) 651 WP_042597625.1 hypothetical protein -
  ABFU48_RS04640 (ABFU48_04635) - 1096485..1098911 (-) 2427 WP_323530843.1 penicillin-binding protein 1A -
  ABFU48_RS04645 (ABFU48_04640) comM 1099127..1100185 (+) 1059 WP_336624848.1 pilus assembly protein PilM Machinery gene
  ABFU48_RS04650 (ABFU48_04645) - 1100185..1100919 (+) 735 WP_323530841.1 PilN domain-containing protein -
  ABFU48_RS04655 (ABFU48_04650) - 1100916..1101581 (+) 666 WP_116923102.1 type 4a pilus biogenesis protein PilO -
  ABFU48_RS04660 (ABFU48_04655) - 1101578..1102111 (+) 534 WP_011038332.1 pilus assembly protein PilP -
  ABFU48_RS04665 (ABFU48_04660) - 1102131..1104074 (+) 1944 WP_014508815.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37567.19 Da        Isoelectric Point: 4.3482

>NTDB_id=1000579 ABFU48_RS04645 WP_336624848.1 1099127..1100185(+) (comM) [Xanthomonas campestris pv. raphani strain 0516]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSCLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1000579 ABFU48_RS04645 WP_336624848.1 1099127..1100185(+) (comM) [Xanthomonas campestris pv. raphani strain 0516]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAACGCAGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCTATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGTTGGCGGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCATTCGCGGTCGAGAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
TGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCAGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTCACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAAATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GTTGCGCGGCGTTGTCGTGTCTGCCCGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment