Detailed information NTG1000137

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABFU31_RS16270
• Genome accession: NZ_CP155950
• Coordinates: 3719554..3720948 (+)
• Length: 464 a.a.
• NCBI ID: WP_012437607.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. raphani strain bglFP 6814
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3721348..3745195	3719554..3720948	flank	400

Gene organization within MGE regions

Location: 3719554..3745195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU31_RS16270 (ABFU31_16255)	pilR	3719554..3720948 (+)	1395	WP_012437607.1	sigma-54 dependent transcriptional regulator	Regulator
ABFU31_RS16275 (ABFU31_16260)	pilB	3722333..3724069 (-)	1737	WP_040940802.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFU31_RS16280 (ABFU31_16265)	-	3724225..3725076 (+)	852	WP_108133901.1	glycosyltransferase family 2 protein	-
ABFU31_RS16285 (ABFU31_16270)	-	3725126..3725989 (+)	864	WP_116921534.1	glycosyltransferase	-
ABFU31_RS16290 (ABFU31_16275)	-	3725974..3727146 (+)	1173	WP_181920810.1	glycosyltransferase	-
ABFU31_RS16295 (ABFU31_16280)	-	3727140..3727982 (+)	843	WP_147308817.1	glycosyltransferase	-
ABFU31_RS16300 (ABFU31_16285)	-	3727985..3728830 (-)	846	WP_323535832.1	glycosyltransferase family 9 protein	-
ABFU31_RS16305 (ABFU31_16290)	-	3729168..3729926 (-)	759	WP_116921530.1	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	-
ABFU31_RS16310 (ABFU31_16295)	-	3730050..3731870 (-)	1821	WP_147308815.1	hypothetical protein	-
ABFU31_RS16315 (ABFU31_16300)	-	3731929..3732351 (-)	423	WP_104570926.1	pilin	-
ABFU31_RS16320 (ABFU31_16305)	pilA/pilAI	3732452..3732850 (-)	399	WP_104570927.1	pilin	Machinery gene
ABFU31_RS16325 (ABFU31_16310)	pilC	3733201..3734463 (+)	1263	WP_104570928.1	type II secretion system F family protein	Machinery gene
ABFU31_RS16330 (ABFU31_16315)	-	3734470..3735333 (+)	864	WP_011038216.1	A24 family peptidase	-
ABFU31_RS16335 (ABFU31_16320)	coaE	3735347..3735970 (+)	624	WP_116921528.1	dephospho-CoA kinase	-
ABFU31_RS16340 (ABFU31_16325)	-	3736164..3736419 (+)	256	Protein_3156	SymE family type I addiction module toxin	-
ABFU31_RS16345 (ABFU31_16330)	-	3736518..3737852 (-)	1335	WP_012437598.1	HAMP domain-containing sensor histidine kinase	-
ABFU31_RS16350 (ABFU31_16335)	-	3737845..3738522 (-)	678	WP_003490678.1	response regulator transcription factor	-
ABFU31_RS16355 (ABFU31_16340)	rimK	3739172..3740047 (-)	876	WP_116921527.1	30S ribosomal protein S6--L-glutamate ligase	-
ABFU31_RS16360 (ABFU31_16345)	glgX	3740541..3742670 (+)	2130	WP_116921526.1	glycogen debranching protein GlgX	-
ABFU31_RS16365 (ABFU31_16350)	-	3743196..3743588 (-)	393	WP_011038224.1	H-NS family nucleoid-associated regulatory protein	-
ABFU31_RS16370 (ABFU31_16355)	-	3743679..3744074 (-)	396	WP_042594933.1	hypothetical protein	-
ABFU31_RS16375 (ABFU31_16360)	-	3744258..3744404 (-)	147	WP_076054137.1	hypothetical protein	-
ABFU31_RS16380 (ABFU31_16365)	-	3744468..3744698 (+)	231	WP_181920809.1	hypothetical protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50253.62 Da
• Isoelectric Point: 6.3587

>NTDB_id=1000137 ABFU31_RS16270 WP_012437607.1 3719554..3720948(+) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6814]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1000137 ABFU31_RS16270 WP_012437607.1 3719554..3720948(+) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6814]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCACCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTTACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTCGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAGCAACTCGAACGCGC
CGCGATCCAGAAGGCGCTAGAAGAAAACCGCTGGAACAAGACCAAGACTGCCGCGCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491