58426

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 420475..421003 Replicon chromosome
Accession NZ_CP013320
Organism Vibrio cholerae strain NCTC9420

Toxin (Protein)


Gene name relE Uniprot ID A0A0X1KZS6
Locus tag ASZ86_RS16695 Protein ID WP_000221354.1
Coordinates 420716..421003 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0X1KZS8
Locus tag ASZ86_RS16690 Protein ID WP_001250179.1
Coordinates 420475..420726 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ASZ86_RS16640 415743..416057 + 315 WP_000071008.1 DNA-binding transcriptional regulator -
ASZ86_RS16645 416194..416628 + 435 WP_000256036.1 GNAT family N-acetyltransferase -
ASZ86_RS20650 416796..416951 + 156 WP_000751734.1 hypothetical protein -
ASZ86_RS16660 417076..418056 - 981 WP_000019370.1 IS5-like element ISVch5 family transposase -
ASZ86_RS16665 418124..418430 + 307 Protein_447 CatB-related O-acetyltransferase -
ASZ86_RS16670 418567..419259 + 693 WP_001047169.1 GNAT family N-acetyltransferase -
ASZ86_RS16675 419259..419660 + 402 WP_000351248.1 type II toxin-antitoxin system death-on-curing family toxin -
ASZ86_RS20545 419630..419773 + 144 WP_071908341.1 DUF3265 domain-containing protein -
ASZ86_RS16685 419848..420261 + 414 WP_000049417.1 VOC family protein -
ASZ86_RS16690 420475..420726 + 252 WP_001250179.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ASZ86_RS16695 420716..421003 + 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ASZ86_RS16700 421131..421586 + 456 WP_001245327.1 GNAT family N-acetyltransferase -
ASZ86_RS16710 421908..422060 + 153 WP_001884520.1 DUF645 family protein -
ASZ86_RS16715 422262..422759 - 498 WP_000982260.1 GNAT family N-acetyltransferase -
ASZ86_RS16720 422756..423028 - 273 WP_000246253.1 DUF1778 domain-containing protein -
ASZ86_RS16725 423259..423927 + 669 WP_000043871.1 hypothetical protein -
ASZ86_RS16730 424079..424366 + 288 WP_000426470.1 hypothetical protein -
ASZ86_RS16735 424507..424878 + 372 WP_001164080.1 nucleotide pyrophosphohydrolase -
ASZ86_RS16740 424945..425370 + 426 WP_001882332.1 DUF1778 domain-containing protein -
ASZ86_RS16745 425367..425900 + 534 WP_000118351.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 304702..436238 131536
- inside Integron - - 309782..435862 126080
flank IS/Tn - - 417076..418056 980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-71)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10991.96 Da        Isoelectric Point: 10.4934

>T58426 WP_000221354.1 NZ_CP013320:420716-421003 [Vibrio cholerae]
MTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSAKLRGYDAVYKIKLRTAGYRLAYEVIDDEIVVYVLAVGK
RDKDAVYKKLASRFG

Download         Length: 288 bp

>T58426 NZ_CP013320:420716-421003 [Vibrio cholerae]
ATGACCTATAAGTTAAAGTTTCTGCCGGCTGCGCAAAAGGAATGGAGTAAGTTAGCTCCGACAATTCAGAGTCAGTTCAA
GAAGAAGTTAAAGGAACGATTAGAAAATCCGCACGTCCCTTCGGCTAAGCTTCGAGGATACGACGCTGTTTACAAGATTA
AACTTCGTACGGCGGGTTATCGTTTAGCTTATGAGGTTATTGACGATGAGATAGTTGTCTATGTCCTTGCTGTCGGTAAA
CGTGACAAAGATGCTGTCTATAAAAAACTGGCTTCACGCTTCGGTTAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9136.29 Da        Isoelectric Point: 4.0197

>AT58426 WP_001250179.1 NZ_CP013320:420475-420726 [Vibrio cholerae]
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLIDMLDDYELSQIVDSRRADLAQAVEVNI
DDL

Download         Length: 252 bp

>AT58426 NZ_CP013320:420475-420726 [Vibrio cholerae]
ATGAGACAAGTTTTAGCGAATTGCTCTGCAAGTATTTCAGAGTTAAAGAAGAACCCAACAGCTTTGTTGAATGAGGCTGA
TGGGTCTGCAATTGCAATTTTAAACCACAACAAGCCAGCGGCTTACCTTGTGCCAGCGGAAACGTATGAGTATCTCATCG
ATATGCTCGATGATTATGAGCTTTCCCAAATTGTCGATAGTCGCCGAGCTGACTTAGCACAAGCTGTGGAAGTAAATATT
GATGACCTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0X1KZS6

Antitoxin

Source ID Structure
AlphaFold DB A0A0X1KZS8

References