Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-Phd |
Location | 417538..418085 | Replicon | chromosome |
Accession | NZ_CP013304 | ||
Organism | Vibrio cholerae strain CRC711 |
Toxin (Protein)
Gene name | relE | Uniprot ID | Q9KM92 |
Locus tag | ASZ82_RS16640 | Protein ID | WP_000229317.1 |
Coordinates | 417783..418085 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | Q9KM93 |
Locus tag | ASZ82_RS16635 | Protein ID | WP_000861987.1 |
Coordinates | 417538..417795 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ASZ82_RS16585 | 412567..413022 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
ASZ82_RS16595 | 413344..413496 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
ASZ82_RS16600 | 413698..414195 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | - |
ASZ82_RS16605 | 414192..414464 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | - |
ASZ82_RS16610 | 414695..415363 | + | 669 | WP_000043871.1 | hypothetical protein | - |
ASZ82_RS16615 | 415515..415802 | + | 288 | WP_000426470.1 | hypothetical protein | - |
ASZ82_RS16620 | 415943..416314 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
ASZ82_RS16625 | 416381..416806 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | - |
ASZ82_RS16630 | 416803..417336 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | - |
ASZ82_RS16635 | 417538..417795 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
ASZ82_RS16640 | 417783..418085 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
ASZ82_RS16645 | 418319..419236 | + | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
ASZ82_RS16655 | 419393..419782 | + | 390 | WP_001081302.1 | hypothetical protein | - |
ASZ82_RS16660 | 419918..420127 | + | 210 | Protein_449 | GNAT family N-acetyltransferase | - |
ASZ82_RS16665 | 420246..420683 | + | 438 | WP_000503169.1 | IS200/IS605-like element IS1004 family transposase | - |
ASZ82_RS16670 | 420747..420965 | + | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
ASZ82_RS16680 | 421140..422012 | + | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
ASZ82_RS16685 | 422162..422761 | + | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
ASZ82_RS20195 | 422818..422922 | + | 105 | WP_099607150.1 | acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | catB9 | - | 304736..427674 | 122938 | |
- | inside | Integron | - | - | 309816..427298 | 117482 | |
flank | IS/Tn | - | - | 420246..420683 | 437 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11726.68 Da Isoelectric Point: 5.1972
>T58253 WP_000229317.1 NZ_CP013304:417783-418085 [Vibrio cholerae]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T58253 NZ_CP013304:417783-418085 [Vibrio cholerae]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT58253 WP_000861987.1 NZ_CP013304:417538-417795 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT58253 NZ_CP013304:417538-417795 [Vibrio cholerae]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | Q9KM92 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SLM9 |