58250

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 411911..412439 Replicon chromosome
Accession NZ_CP013304
Organism Vibrio cholerae strain CRC711

Toxin (Protein)


Gene name relE Uniprot ID A0A0X1KZS6
Locus tag ASZ82_RS16580 Protein ID WP_000221354.1
Coordinates 412152..412439 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0X1KZS8
Locus tag ASZ82_RS16575 Protein ID WP_001250179.1
Coordinates 411911..412162 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ASZ82_RS16530 407179..407493 + 315 WP_000071008.1 DNA-binding transcriptional regulator -
ASZ82_RS16535 407630..408064 + 435 WP_000256036.1 GNAT family N-acetyltransferase -
ASZ82_RS20270 408232..408387 + 156 WP_000751734.1 hypothetical protein -
ASZ82_RS16545 408512..409492 - 981 WP_000019370.1 IS5-like element ISVch5 family transposase -
ASZ82_RS16550 409560..409866 + 307 Protein_429 CatB-related O-acetyltransferase -
ASZ82_RS16555 410003..410695 + 693 WP_001047169.1 GNAT family N-acetyltransferase -
ASZ82_RS16560 410695..411096 + 402 WP_000351248.1 type II toxin-antitoxin system death-on-curing family toxin -
ASZ82_RS20175 411066..411209 + 144 WP_071908341.1 DUF3265 domain-containing protein -
ASZ82_RS16570 411284..411697 + 414 WP_000049417.1 VOC family protein -
ASZ82_RS16575 411911..412162 + 252 WP_001250179.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ASZ82_RS16580 412152..412439 + 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ASZ82_RS16585 412567..413022 + 456 WP_001245327.1 GNAT family N-acetyltransferase -
ASZ82_RS16595 413344..413496 + 153 WP_001884520.1 DUF645 family protein -
ASZ82_RS16600 413698..414195 - 498 WP_000982260.1 GNAT family N-acetyltransferase -
ASZ82_RS16605 414192..414464 - 273 WP_000246253.1 DUF1778 domain-containing protein -
ASZ82_RS16610 414695..415363 + 669 WP_000043871.1 hypothetical protein -
ASZ82_RS16615 415515..415802 + 288 WP_000426470.1 hypothetical protein -
ASZ82_RS16620 415943..416314 + 372 WP_001164080.1 nucleotide pyrophosphohydrolase -
ASZ82_RS16625 416381..416806 + 426 WP_001882332.1 DUF1778 domain-containing protein -
ASZ82_RS16630 416803..417336 + 534 WP_000118351.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 304736..427674 122938
- inside Integron - - 309816..427298 117482
flank IS/Tn - - 408512..409492 980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-71)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10991.96 Da        Isoelectric Point: 10.4934

>T58250 WP_000221354.1 NZ_CP013304:412152-412439 [Vibrio cholerae]
MTYKLKFLPAAQKEWSKLAPTIQSQFKKKLKERLENPHVPSAKLRGYDAVYKIKLRTAGYRLAYEVIDDEIVVYVLAVGK
RDKDAVYKKLASRFG

Download         Length: 288 bp

>T58250 NZ_CP013304:412152-412439 [Vibrio cholerae]
ATGACCTATAAGTTAAAGTTTCTGCCGGCTGCGCAAAAGGAATGGAGTAAGTTAGCTCCGACAATTCAGAGTCAGTTCAA
GAAGAAGTTAAAGGAACGATTAGAAAATCCGCACGTCCCTTCGGCTAAGCTTCGAGGATACGACGCTGTTTACAAGATTA
AACTTCGTACGGCGGGTTATCGTTTAGCTTATGAGGTTATTGACGATGAGATAGTTGTCTATGTCCTTGCTGTCGGTAAA
CGTGACAAAGATGCTGTCTATAAAAAACTGGCTTCACGCTTCGGTTAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9136.29 Da        Isoelectric Point: 4.0197

>AT58250 WP_001250179.1 NZ_CP013304:411911-412162 [Vibrio cholerae]
MRQVLANCSASISELKKNPTALLNEADGSAIAILNHNKPAAYLVPAETYEYLIDMLDDYELSQIVDSRRADLAQAVEVNI
DDL

Download         Length: 252 bp

>AT58250 NZ_CP013304:411911-412162 [Vibrio cholerae]
ATGAGACAAGTTTTAGCGAATTGCTCTGCAAGTATTTCAGAGTTAAAGAAGAACCCAACAGCTTTGTTGAATGAGGCTGA
TGGGTCTGCAATTGCAATTTTAAACCACAACAAGCCAGCGGCTTACCTTGTGCCAGCGGAAACGTATGAGTATCTCATCG
ATATGCTCGATGATTATGAGCTTTCCCAAATTGTCGATAGTCGCCGAGCTGACTTAGCACAAGCTGTGGAAGTAAATATT
GATGACCTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0X1KZS6

Antitoxin

Source ID Structure
AlphaFold DB A0A0X1KZS8

References