Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ralRA/-
Location 1388838..1389209 Replicon chromosome
Accession NZ_CP008801
Organism Escherichia coli KLY

Toxin (Protein)


Gene name ralR Uniprot ID F4VC37
Locus tag HQ24_RS06930 Protein ID WP_001317028.1
Coordinates 1389015..1389209 (-) Length 65 a.a.

Antitoxin (RNA)


Gene name ralA
Locus tag -
Coordinates 1388838..1389016 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HQ24_RS06905 1384793..1386166 + 1374 WP_000123737.1 ATP-dependent RNA helicase DbpA -
HQ24_RS06910 1386295..1387230 - 936 WP_001157406.1 tRNA 2-thiocytidine(32) synthetase TtcA -
HQ24_RS24165 1387282..1388517 - 1236 WP_000040852.1 site-specific integrase -
HQ24_RS06920 1388519..1388734 - 216 WP_000079604.1 excisionase XisR -
HQ24_RS06925 1388813..1389022 - 210 WP_000276809.1 double-strand break reduction protein RcbA -
- 1388838..1389016 + 179 NuclAT_0 - Antitoxin
- 1388838..1389016 + 179 NuclAT_0 - Antitoxin
- 1388838..1389016 + 179 NuclAT_0 - Antitoxin
- 1388838..1389016 + 179 NuclAT_0 - Antitoxin
HQ24_RS06930 1389015..1389209 - 195 WP_001317028.1 type I toxin-antitoxin system endodeoxyribonuclease toxin RalR Toxin
HQ24_RS06935 1389266..1390075 - 810 WP_000166319.1 recombination protein RecT -
HQ24_RS06940 1390068..1392668 - 2601 WP_000105143.1 exodeoxyribonuclease VIII -
HQ24_RS06945 1392770..1393045 - 276 WP_000632297.1 protein RacC -
HQ24_RS06950 1393120..1393290 - 171 WP_001352098.1 conserved protein, Rac prophage -
HQ24_RS06955 1393290..1393511 - 222 WP_000560225.1 killing protein KilR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 1387282..1408956 21674


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Endodeoxyribonuclease toxin RalR

(6-54)


Sequences

Toxin        


Download         Length: 65 a.a.        Molecular weight: 7018.89 Da        Isoelectric Point: 8.9538

>T47497 WP_001317028.1 NZ_CP008801:c1389209-1389015 [Escherichia coli KLY]
MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV

Download         Length: 195 bp

>T47497 NZ_CP008801:c1389209-1389015 [Escherichia coli KLY]
ATGAGATATGACAATGTTAAACCATGTCCATTTTGTGGTTGTCCATCAGTAACGGTGAAAGCCATTTCAGGATATTACCG
AGCGAAGTGTAACGGATGCGAATCCCGAACCGGTTATGGTGGAAGTGAAAAAGAAGCACTCGAAAGATGGAATAAACGAA
CCACTGGAAATAATAATGGAGGTGTTCATGTATAA

Antitoxin


Download         Length: 179 bp

>AT47497 NZ_CP008801:1388838-1389016 [Escherichia coli KLY]
GAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGA
GAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTT
CAATAGTGGCGGTAATTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7L6LHV7

Antitoxin

Download structure file

References